Gene detail

Gene detail information of Glyur000270s00013297.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G09970.1	0	Leucine-rich receptor-like protein kinase family protein
NR	XP_003593346.1	0	Receptor-like protein kinase HAIKU2 [Medicago truncatula]
COG	YP_004775215.1	3.00E-53	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
Swissprot	tr\|Q9LJM4\|IKU2_ARATH	0	Receptor-like protein kinase HAIKU2 (Precursor)
trEMBL	tr\|G7IFB9\|G7IFB9_MEDTR	0	LRR receptor-like kinase family protein {ECO:0000313\|EMBL:AES63597.1}

Sequence

Transcript Sequence

>Glyur000270s00013297.1
CAGACACTAATGCTCCCACATCCACATGAGTTGNTCCAAGAAGCAAGCACCGCCCAAGTTGAAACCTTTGACTCTTTAGTCCATGTTTTCGTGCCTTTTCTGCATGCATGTGAATACTCTTCTTCCGTGTGAAACCAAACCCAAAATTCCAACTGAGAAACCACCCACCCTCCTCTGTTTCAAACTCTTCTTCCATTTTCCCACCCACTCTCGTCACTCTTATCCTGACCCAACCCAACACTAACAAGTAACAACCCAACCTTCGCCACCGGCATGTTCGCCGGAGGAGTTTCCCGTCACGGGTCACCGCCGGCCACAGTTCTCCTCATTGCTCTGTTTTTCCTCTGCCTCGTAATTACTCACTCTCAGTCAGATCACGAGCTTCAATCACTCATGAAGTTCAAGTCCTCTATTCAAACCTCAGACACACACGTTTTCAGTTCATGGACGCAAACAACAAATTCTCCCTGCAACTTCACCGGGATTGTATGCAATTCCAACGGTTCTGTTTCAGAAATCAACCTCGCGGAGAAACATCTAGTGGGCACTNTCCCATTCGATTCAATTTGCGAGCTTCAATTGCTTGAGAAGATCTCTTTGGAGTCCAACCTNTTGCATGGGAGGATCAGTGAGGATCTGAGGAACTGCACAAACCTCAAGTACTTGGATTTAGGTGGAAACTCATTCACTGGGGCAGTGCCTGATTTGTCAACACTGAACAAGTTACAGTACTTGAACCTAAATGCAAGTGGAATCTCTGGTTCATTCCCTTGGAAGTCATTGGAGAATCTAACCCCTCTCACTTTCTTGAGCCTTGGTGATAACAACCAATTGGAGAGAACCCCTTTCCCTTGGGAGGTCTTAAAGCTTGAAAATTTGTATTGGCTTTACCTCACAAATTGCAGCATCACAGGGAATATTCCAAAGGGTATCGGGAACCTAACTCAGCTTCAGAATCTTGAGCTCTCTGATAACCACTTAACTGGTGAGATTCCACCTGAAATTGGGAAGCTTCNTAGGCTCAGGCAATTGGAGCTATATGATAATCATTTGAGTGGGAAAATCCCAGTTGGGTTTGGAAACCTTACAAGTCTTGTAAACTTTGATGCTTCTAATAATCAGCTTGAAGGTGATCTTTCTGAGCTAAGGTTTTTGAAAAACCTTGCATCCCTGCAGCTTTTTCAGAACCATTTCTCAGGAGAGATTCCAGAAGAGTTTGGCGATCTTAAGAATCTCACTGAACTCTCTCTCTATGATAACAAGCTCACTGGTTTTCTTCCTCAAAAGCTTGGCTCATNGGTAGGGATGCAATTCATAGATGTTTCAGACAATTCTCTTTCTGGTCCTATACCACCTGACATGTGTAGGAACAACCAAGTTACAGACATGGCACTGTTGAACAACAGCTTCACTGGAAGTATACCAGAAACCTATGCAAATTGCACATCTTTGGCTCGTTTCCGTTTGAATAGGAACTCTCTTTCTGGTGTTGTTCCTTCAGGCATATGGGGCTTGCCAAATTTGGAACTGATCGATCTTGAAAAGAACCANTTTGAAGGTCCCATATCGTCTGGTATTGGCAAAGCAAGATCTCTCGCGCAGCTTTTTTTATCTGACAATCAGTTCTCAGGTGAGTTACCTTTGGAAATCTNAGAAGCTTCTTCATTGGTATCAATTCAGCTAAGTTCAAATCGAATCTCAGGTCACATCCCAGAAACCATAGGCAAATTGAAGAAACTAACTAGCCTTACTTTGAATGGTAACAACCTTTCTGGTGTCATACCAGATTCTATTGGTTCTTGTGTTTCTCTTAATGAGATAAACCTTGCTGGTAACTCTCTTTCTGGGGTAATTCCAATTAGCATTGGGTCTTTGCCTACCCTCAATTCACTGAACTTGTCCTTAAACAAGCTCTCTGGTGAGATTCCATCAAGCTTANCATCTCTTAGACTTAGCCTTCTTGATATATCAAACAACCATTTGTTTGGTTCCATACCTGAATCACTGGCTATTTCAGCTTTCAAAGATGGGTTCATGGGAAATCCTGGCTTATGCAGCAATACTTTGAAAAACTTCCAACCATGTTCCTTGGAATCTGGCAGCTCTAGGAGACTCAGAAACCTTGTACTCTTTTTCATTGCTGGCTTAATGGCTCTGCTTGTTGTTTCATCAGCATATTTCCTCTTCATGAGACTGAAGCAGAACAAGTTTGAGAAGCCACGGAAGACTAATACTAATTCATGGGATTTCAAGCAGTACCACGTGCTGAACTTCAATGAGAATGAGATCATTGAAGGGATCAAAGGTGAGAACTTGATTGGCAAAGGAGGGTCTGGGAATGTTTACAAGGTTGTGCTTAAAAGTGGGGAAGTATTTGCAGTCAAACACATATGGACTTCAAATGATAGGGGAAGTTGCAGGAGCAGCTCAGCTATGCTGAAAAGGAGCTCTAAATCACCTGAGTTTGATGCTGAGGTAGCAACTCTGAGCTCTATAAGGCATGTGAATGTGGTGAAGCTCTATTGTAGCATCACAAGTGAGGANAGTAGCCTGCTTGTTTATGAGTTCTTGCCAAATGGGAGTTTGTGGGATAGGTTGCACAATTGTAGTAAGAAGAGGACTCAAATGGGTTGGGAGGTTAGGTATGACATTGCATTAGGTGCAGCTAGAGGGTTNGAGTACCTGCATCATGGGTGTGATAGACCTGTTATACACAGGGATGTCAAATCCAGTAACATATTGCTGGATGAGGAATGGAAGCCAAGGATTGCTGATTTTGGGCTTGCCAGGATTGTGCAGGGAGGAGGAGCAGGCAATTGGACCCATGTCATTGCTGGAACACTTGGCTACATGGCTCCTGAGTATGCCTACACTTGTAAGGTGACAGAGAAGAGCGATGTTTACAGTTTTGGGGTAGTGCTGATGGAGTTGGTAACGGGGAAGAGGCCTGTGGAGGCAGAGTTTGGAGAGAGCAAGGATATTGTGTACTGGGTATGCAGCAACATGATGAGGAGCAAAGAGAGTGCGCTTGAATTGGTGGATTCTACCATCGGAGAGCATTTCAAAGAGGATGCCATGAAGGTGTTGAGAATTGCGACAATGTGCACGGCGAAAATTCCAGCATCAAGACCGTCAATGAGAATGTTGGTTCAAATGCTGGAAGAGGCAGAGCCATGTGCTCCAACCAAAGTGATTGTCACCACAGATGGTTAAAACAAGTTACACACACCAGAGAATGAATGCNGAAAAAAAATAAGTGTTTTCAATCAACTGAATACATTTTTCCCCCATCTATGCTAAGCAGCAAACATAGTGTGGCAGCGAAAGGGTGATGAATACTATGTAGTCAACAAAATAAAAATGTCTTGGCTTCGTAAGGTTGTAACTGAATTACCTCTCACCCCTGCCTTTTTTGTNAAAAAATAAAAAGCCTNTAGTTTGAATCAACTGCTAGTGAGAAACCAAAAGAGGACTAGCTTCGTAGCATGTGTGTTAATGAAATTCTATTTAAAATTTTGACTTAATTATACTTTTGATCTCTCATGTATTAAATTGAGTGATTTTGGTATCCTATTTTTTCAATTGCNCGATTTTGGTCTTCCAAATATTATAATTATGNAATTTTGGTCCCAGTTACAATTACATGATTTTGGTCCTCAGAATCACAATTGTGCTATTTTGATTTCTAGTCGAAGAAATGAGCATTGC

Protein Sequence

>Glyur000270s00013297.1
MFAGGVSRHGSPPATVLLIALFFLCLVITHSQSDHELQSLMKFKSSIQTSDTHVFSSWTQTTNSPCNFTGIVCNSNGSVSEINLAEKHLVGTXPFDSICELQLLEKISLESNLLHGRISEDLRNCTNLKYLDLGGNSFTGAVPDLSTLNKLQYLNLNASGISGSFPWKSLENLTPLTFLSLGDNNQLERTPFPWEVLKLENLYWLYLTNCSITGNIPKGIGNLTQLQNLELSDNHLTGEIPPEIGKLXRLRQLELYDNHLSGKIPVGFGNLTSLVNFDASNNQLEGDLSELRFLKNLASLQLFQNHFSGEIPEEFGDLKNLTELSLYDNKLTGFLPQKLGSXVGMQFIDVSDNSLSGPIPPDMCRNNQVTDMALLNNSFTGSIPETYANCTSLARFRLNRNSLSGVVPSGIWGLPNLELIDLEKNXFEGPISSGIGKARSLAQLFLSDNQFSGELPLEIXEASSLVSIQLSSNRISGHIPETIGKLKKLTSLTLNGNNLSGVIPDSIGSCVSLNEINLAGNSLSGVIPISIGSLPTLNSLNLSLNKLSGEIPSSLXSLRLSLLDISNNHLFGSIPESLAISAFKDGFMGNPGLCSNTLKNFQPCSLESGSSRRLRNLVLFFIAGLMALLVVSSAYFLFMRLKQNKFEKPRKTNTNSWDFKQYHVLNFNENEIIEGIKGENLIGKGGSGNVYKVVLKSGEVFAVKHIWTSNDRGSCRSSSAMLKRSSKSPEFDAEVATLSSIRHVNVVKLYCSITSEXSSLLVYEFLPNGSLWDRLHNCSKKRTQMGWEVRYDIALGAARGXEYLHHGCDRPVIHRDVKSSNILLDEEWKPRIADFGLARIVQGGGAGNWTHVIAGTLGYMAPEYAYTCKVTEKSDVYSFGVVLMELVTGKRPVEAEFGESKDIVYWVCSNMMRSKESALELVDSTIGEHFKEDAMKVLRIATMCTAKIPASRPSMRMLVQMLEEAEPCAPTKVIVTTDG

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00270	169298	173514	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.12.4

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005515 protein binding

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000270s00013297.1	PF08263.7	LRRNT_2	34	74	1.40E-08
Glyur000270s00013297.1	PF00560.28	LRR_1	127	147	0.29
Glyur000270s00013297.1	PF00560.28	LRR_1	201	223	0.67
Glyur000270s00013297.1	PF12799.2	LRR_4	225	261	1.20E-06
Glyur000270s00013297.1	PF13516.1	LRR_6	318	335	1.5
Glyur000270s00013297.1	PF13855.1	LRR_8	464	523	3.00E-09
Glyur000270s00013297.1	PF13516.1	LRR_6	534	555	1.2
Glyur000270s00013297.1	PF00069.20	Pkinase	680	960	9.30E-45

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	11.298
SRR1783600	control	11.270
SRR1783602	moderate drought stress	12.352
SRR1811619	moderate drought stress	12.188

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.132
DRR006520	Root Summer glycyrrhizin high producing strain	4.992
DRR006521	Root Winter glycyrrhizin high producing strain	7.018
DRR006522	Root Winter glycyrrhizin high producing strain	6.801
DRR006523	Root Summer glycyrrhizin low producing strain	19.213
DRR006524	Root Summer glycyrrhizin low producing strain	19.067
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.451
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.450

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.786
SRR2868004	Drought Stress (root)	6.980
SRR2967015	Control (root)	8.292

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	11.009
SRR9715740	Leaf	4.398
SRR9715741	Leaf	16.698
SRR9715739	Root	10.542
SRR9715742	Root	27.396
SRR9715743	Root	23.996

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.588
SRR8749028	MeJA induced 9h	7.590
SRR8749029	MeJA induced 9h	2.880
SRR8749030	Uninduced	5.527
SRR8749031	Uninduced	2.076
SRR8749032	Uninduced	2.759

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	18.902
SRR8400027	Control - Root	18.110