Gene detail

Gene detail information of Glyur000270s00013288.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G09650.1	5.00E-125	pyrophosphorylase 6
NR	XP_004485644.1	0	PREDICTED: soluble inorganic pyrophosphatase 1, chloroplastic-like isoform X2 [Cicer arietinum]
COG	YP_005035472.1	2.00E-20	putative inorganic pyrophosphatase [Bacteriovorax marinus SJ]
Swissprot	tr\|Q9LXC9\|IPYR1_ARATH	9.00E-157	Soluble inorganic pyrophosphatase 1, chloroplastic (Precursor)
trEMBL	tr\|B7FIM7\|B7FIM7_MEDTR	0	Inorganic pyrophosphatase {ECO:0000313\|EMBL:AES63593.1}

Sequence

Transcript Sequence

>Glyur000270s00013288.1
CCCTCGCCCTTGAATGCAAAAGCGGGGGGCTAAGCTAAGCTATTGCCTATTTGTGATGGACATTCAATAACGCTATTCACTAGTCAAAATTTGAACCAATAAAAACCAAGATACTCTCTACAATACAGACAAACACTGCCACAGAGAACCAAAAAGCCTATCAGCAATAAGAGTAGAGTTGAGTCTCTCTCTCTCTCTCTCTCACTCACTCACTCACACACATTACTGTCTCACTCAGCATCATCAGCGTCAGCATCCATGGCAGCCACGAGAGCGATAACCATAGCCAGCAACTCCACCTGCTCTCTGCTNACTAAGAAGCCCTTTCTGGGTGCCCGCGCTCTTCGCCTCAACAACCTCAAGGTTCCTTCTAGGACTACTACCAGGTCTTATACCTGCAGGGCCATCTACAACCCCGAGGTTACTGTCAAGGAAGAAGGCCAACCCCAAACCCTCGATTACAGAGTTTTCTTTGTCGACAAATCCGGCAAAAAGGTTTCTCCGTGGCATGATATTCCATTGCAGCCAGGTGATGGTGTCTTCAACTTCGTTGTTGAAATACCAAAAGAATCCAGTGCAAAGATGGAGGTTGCCACTGATGAGCCTTTCACTCCCATAAAACAGGATACGAAAAAGGGGAAGCTTCGATTTTACCCCTATAATATACATTGGAACTATGGCTTACTCCCACAAACATGGGAAGATCCGTCTCTTGCAAACTCTGAAGTTGAAGGAGCATTTGGGGATAATGATCCGGTTGATGTGGTTGAGATTGGTGAAAGCCAGAGGAAAATAGGAGAGGTTCTCAAGGTCAAACCCTTGGCGGCATTAGCCATGATTGATGAAGGAGAACTTGATTGGAAAATAGTTGCAATTTCATTAGATGATCCAAGAGCTTCACTTGTGAATGATGTTGATGATGTTGAGAAGCACTTTCCAGGAACCCTCATTGCAATTAGGGACTGGTTCAGAGACTACAAGATACCTGATGGGAAGCCTGCTAATAANTTTGGGCTTGGCAACAAGGCAGCAAATAAGGATTATGCACTTAAGGTCATCACAGAGACCAACGAGTCTTGGAATAAACTCGTCAAGAGATCAATTCCTGCAGGAGAGCTGTCACTTGTGTAAATGCATTGGCACAGTGTCAGTGGTTCATGCCACTCCTTTNTTTTTCTACAATTTATATTTATGACGTAGCAAACTCTTCTGTTGAGAGCTTACCGGTTATTATGTCTTTGACATCAATGCCATTTTGGCCAGGCGCTAGTTGAATATATATTCTGCATTTTATTTGTCATTCTTTATTCATTTTCCATTCTAATGAGATAACTCCAGATGGTTCTTGAAATAGGAGTGGCAATAGTCCAATAGTAGTTGAAAAATAAAACTNCAATCTTGTGGGATATTCAGGCTGAAATTTTATATCGGCAATGATTAGTTAATTATGCCAGCCTAATTTATAGGCAATCTCGGTTTTCTATGACAAATTTAGCCAGATCTAAATTGTGGTCAGTTGCATCTGATTTAAATTTAACCTGATAAAGATTTTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00270	141313	145031	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01507	ppa	EC:3.6.1.1	Oxidative phosphorylation	map00190

Gene Ontology

biological_process
GO:0006796 phosphate-containing compound metabolic process

cellular_component
GO:0005737 cytoplasm

molecular_function

GO:0000287 magnesium ion binding

GO:0004427 inorganic diphosphatase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000270s00013288.1	PF00719.14	Pyrophosphatase	96	276	3.50E-49

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	77.477
SRR1783600	control	78.176
SRR1783602	moderate drought stress	63.149
SRR1811619	moderate drought stress	63.052

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	74.392
DRR006520	Root Summer glycyrrhizin high producing strain	73.517
DRR006521	Root Winter glycyrrhizin high producing strain	13.420
DRR006522	Root Winter glycyrrhizin high producing strain	12.886
DRR006523	Root Summer glycyrrhizin low producing strain	64.131
DRR006524	Root Summer glycyrrhizin low producing strain	63.980
DRR006525	Leaf Summer glycyrrhizin high producing strain	133.348
DRR006526	Leaf Summer glycyrrhizin high producing strain	132.736

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	53.653
SRR2868004	Drought Stress (root)	38.675
SRR2967015	Control (root)	34.701

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	103.653
SRR9715740	Leaf	127.489
SRR9715741	Leaf	97.999
SRR9715739	Root	42.272
SRR9715742	Root	42.686
SRR9715743	Root	35.638

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	32.721
SRR8749028	MeJA induced 9h	19.107
SRR8749029	MeJA induced 9h	22.286
SRR8749030	Uninduced	11.966
SRR8749031	Uninduced	2.349
SRR8749032	Uninduced	6.759

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	68.949
SRR8400027	Control - Root	64.993