Gene detail information of Glyur000270s00013283 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G64460.8 | 7.00E-82 | Phosphoglycerate mutase family protein |
| NR | KHN46230.1 | 1.42E-133 | Hypothetical protein glysoja_034558 [Glycine soja] |
| COG | YP_004691572.1 | 3.00E-11 | phosphoglycerate mutase family protein [Roseobacter litoralis Och 149] |
| Swissprot | tr|Q9FGF0|PGML1_ARATH | 3.00E-111 | Phosphoglycerate mutase-like protein 1 {ECO:0000305} |
| trEMBL | tr|I1KQV4|I1KQV4_SOYBN | 7.00E-128 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G06920.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00270 | 115897 | 122284 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000270s00013283.1 | PF00300.17 | His_Phos_1 | 53 | 221 | 8.30E-17 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.793 |
| SRR1783600 | control | 1.776 |
| SRR1783602 | moderate drought stress | 1.459 |
| SRR1811619 | moderate drought stress | 1.296 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.172 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.579 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.218 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.750 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.116 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.599 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 13.728 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 13.645 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 4.573 |
| SRR2868004 | Drought Stress (root) | 4.204 |
| SRR2967015 | Control (root) | 3.105 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 8.451 |
| SRR9715740 | Leaf | 13.046 |
| SRR9715741 | Leaf | 8.218 |
| SRR9715739 | Root | 1.966 |
| SRR9715742 | Root | 2.123 |
| SRR9715743 | Root | 1.715 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.126 |
| SRR8749028 | MeJA induced 9h | 2.849 |
| SRR8749029 | MeJA induced 9h | 2.852 |
| SRR8749030 | Uninduced | 1.581 |
| SRR8749031 | Uninduced | 0.914 |
| SRR8749032 | Uninduced | 1.610 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 5.719 |
| SRR8400027 | Control - Root | 5.425 |