Gene detail

Gene detail information of Glyur000270s00013280

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G64430.1	7.00E-71	Octicosapeptide/Phox/Bem1p family protein
NR	XP_004485634.1	0	PREDICTED: uncharacterized protein LOC101503649 [Cicer arietinum]
trEMBL	tr\|A2Q1B1\|A2Q1B1_MEDTR	0	Octicosapeptide/phox/Bem1p (PB1) domain protein {ECO:0000313\|EMBL:AES63569.1}

Sequence

Transcript Sequence

>Glyur000270s00013280.1
ATGGATAACTATGCATACCAATCGTACCCAGATTCAGGAGAATCCTCTCCACGTTCTAGAGAGATCGACTTCGAGAACCCTCCACCCACATCACCATGGGACGATCAAAACTACAAGGTGAAGTTCATGTGCAGTTACGGCGGCAAGATCCAGCCACGCACCCACGACAACCAACTTTCCTACGTCGGCGGCGAGACCAAGATCCTCGCCGTCGATCGCAACACCAAGTTCCCCGCCATGGTTTCCAAGCTCTCCGCCCTCTGCGGCACCGCCACCAACGACCTCTCCTTCAAGTATCAGCTCCCCGGCGAAGACCTCGACGCCCTCATATCCGTAACCAACGACGACGACCTCGATCACATGATGCACGAGTACGATCGTCTCTACCGTGCTTCCGCTAGACCCGCCCGCATGCGACTATTCCTCTTCGTCAATGATTCCGGTCCCTCTTCCGACCCGGTCAAACCCAACAACAACGTCGACTACCTCTTCGNTCTCGAAAAGTCCTCCGTCGCCGCTGCCGTTCCGCAACCTTCCCCCGTCGCCGCCGTCAAGTTCCATGATCCGGTGCCGGAGCCTGTGGCGCCGCCTCCCGTGTACCAACCGCGACCCGCTTTCAATCCTCCTGATCGGGTCGTTGGTTCGGATCCTGGCGTGAACCACCCAATCGAGATTCAGAGGCAGTTGCAGCGGATGCAGATTGCTGCGGAGAACGAGCAAGCTGCGTATCGGAGGAAAAGCGAGGACATCCTCGCCGGGAATTACTCCGCCGGTGCCGGAGACTTTTACGTTCACAAGCCACCGCCTGAAAAATTCCCACCATCTAATTTCCCGGCACCGCCGCAGCAGCACCAGGCGGGTTATTGGCCGGAAAAGACAGTTTCCGGTGAGGTTTATCCGCCGAATGCTTCGGCTGCTCCTGGAGGAGGGGAATCGCCGGTTTATATGATTCCGGCGACGGGAGGTTACTATCATGCGCCGGTGGTGCGTCCACCACCGGCCACTCAAGGGTACTACGCGGTGCAACGAATGCCTTCTGATGCTTACCGTGAGGCGCCGGTTTACGGCGGCGCACCGCCACCTAAAGCGCCGTTTTCGTCGGCGGTTCCGGTGAGCTTCGCACCGGCGCAGCCGATTAAAGGTCCCGCGTACACGGAAGGAGTTAGTATGGTTCGGCCAGCTGGCATACCGGATAACACGGCACCTACTTACGCACAGGTGGCGTACGATAGTGCTAGTGGGAGACAGGTTTATTATACTGCTCCGGGTGGCGTAGTACACACTCCGCAGTACCAAGGAGCTGCTCCGCCCGTCACCACTGATCTAAGACAGGGTGGAGTGTCGTTGGGTCAAGATGTTAAAGTCATGAACAAGATTTCTCAAGGTTCAGTGTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00270	97302	98696	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000270s00013280.1	PF00564.19	PB1	55	144	6.40E-18

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	225.093
SRR1783600	control	226.521
SRR1783602	moderate drought stress	302.577
SRR1811619	moderate drought stress	301.760

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	275.706
DRR006520	Root Summer glycyrrhizin high producing strain	272.872
DRR006521	Root Winter glycyrrhizin high producing strain	153.348
DRR006522	Root Winter glycyrrhizin high producing strain	149.215
DRR006523	Root Summer glycyrrhizin low producing strain	279.015
DRR006524	Root Summer glycyrrhizin low producing strain	296.294
DRR006525	Leaf Summer glycyrrhizin high producing strain	56.302
DRR006526	Leaf Summer glycyrrhizin high producing strain	56.184

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	80.903
SRR2868004	Drought Stress (root)	100.304
SRR2967015	Control (root)	124.970

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	56.224
SRR9715740	Leaf	69.859
SRR9715741	Leaf	97.645
SRR9715739	Root	609.283
SRR9715742	Root	294.101
SRR9715743	Root	321.271

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	109.173
SRR8749028	MeJA induced 9h	134.354
SRR8749029	MeJA induced 9h	59.923
SRR8749030	Uninduced	51.071
SRR8749031	Uninduced	14.790
SRR8749032	Uninduced	50.059

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	170.742
SRR8400027	Control - Root	107.474