Gene detail

Gene detail information of Glyur000270s00013277

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G73150.1	9.00E-54	global transcription factor group E3
NR	XP_007148328.1	0	hypothetical protein PHAVU_006G199500g [Phaseolus vulgaris]
Swissprot	tr\|Q9S7T1\|GTE3_ARATH	6.00E-65	Transcription factor GTE3, chloroplastic (Precursor)
trEMBL	tr\|V7BQQ1\|V7BQQ1_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW20322.1}

Sequence

Transcript Sequence

>Glyur000270s00013277.1
GGTCTTATCGGCGCGTGATTCCCGGTATACTGCTGACTCATGCTCTGTTCGACCCGCATTTGGAAATTCATGCCGGAATTACGCCGGAATCTCACCGGACGGACGTGATTTCGTACCTCCATGGCTTCCGCCGTCCTAGCCAACCGTAACGAACCTAATTGGCCACAGCATAGAGGCGGTGGAGCGGGATTCATGGGAAAAGTACCTTTCTCTAACTCTAACCCTAACCCTAAATTAGCCAACAGCAAGAGGACCCAATCGGCGTCCGATGACGCCTCCTCCATCAATCGGCGATCTAACGACGCCGCCAATCACTCCCAATACGTGACCTTCAGCGTTTCGTCCTTCACGAAGAAGGAGCTGAACGACCTCAAAAATCGCCTCGTCTCGGAGCTCGAACAGATTCGAAATCTGAAGAATCGAATCGAGTCCGGCGAATTGTTTCAACCCAATGCCCCGCCGAAGAAATCGACGATGTGCAAGAAGATTTCCGGCAACAAGCGACCCTTGCCGTTGAATCCCCCAAAAGACTTGAAACGTTCTCATTCGGAGGTTTTGCAGAAACTGATGAAACACAAACACGGTTGGATCTTCAACGCACCCGTCGATGTCGTTGGAATGGGCCTTCACGACTACTACGACATAATCAAGAAGCCCATGGATCTGGCTGAATTCGCCACCGATGTTCGGTTGACATTCAACAATGCACTGACCTATAACCCTAAGGGTCACGATGTTTACACCATGGCGGAGCAGCTTCTCGCGAGGTTTGAGGAACTGTATCGGCCCGTGCACGAGAAATTCGAGGATTGGCTGAGGCAGGATCGTGATTTCGAGGAGGAATTGCAGGCCAGTTCGTGGAACCATGTTGTTGAGCCGCCGGAGAGGCCTCCGCAGCCCCCTGCAAGTTCTTCAAACCCTCCGTTGCTGCAATCTCCGGTGCGCACTCCGTCACCAATGCGAGCCCCTCCCGTGAAGCCTTTGAAGCAGCCCAAGCCAAAGGCCAAGGACCCCAACAAGAGGGATATGAGTCTCGAGGAGAAGCATAAGTTGGGACTTGGGTTGCAGAGTTTGCCGCCGGAGAAGATGGAACAGGTGGTGCAGATCATAAGGAAGAGGAATGGGCACTTGAAGCAGGATGGGGATGAGATTGAGCTTGATATTGAGGCTGTTGATACGGAGACCCTTTGGGAACTTGATAGATTAGTGACCAATTGGAAGAAGATGATGAGCAAGATTAAGCGGCAGGCACTGATGGGCAATGTGAACAGCAACAACGTGGCGTCGAACAAAGCCAATGGGGAATTGCCTGCTAGCGAGAAGGTTGATGCAGCAGCGCCGGTTGAGGTGAAGAAGCCGAAGAAAGTGGAAGCAGGGGATGAGGATGTTGACATTGGGGACGAGATGCCAATGAGCATGTTTCCCCCTGCCATGCTAGTAGTAGTTCTAGTAGCTCGAGCAGTTCAAGCAGTGATTCCTCGTCATCAAGTGATTCTGATTCGGGGAGTTCCTCGGGGAGTGATTCTGAAGCAGACAATGGGCACTTATAGCAGCTAGGGCTTTCGGAAACTAATGGTCAAGCAAGATTAATATGGGGTAGGCAGATGAAGAATGTTTTTGCTTCATTGGCTTCCCTTGTGGGTGTTGCTTAAATTCATGATGAGGGGTTGTGACCATTGTTTGTTGGTTCAGTTTGGGAGTGGNGGATTGGATTGTGCTGCTGTGCACCGGCTCGAGGTTTTGTGGTGTGACAGAAGATGTAAAAATGAATTCGGAAAACCCAAGTTNATCCAAAACAAAATTGTAGGCCAGAAAGTAGACTGATATGTGGTGAAAATCCTAGGATAGATCGTTAATTAAAGATTAGGAATAGAACCAAGAGAATTAGTTTTTTTTTTTGGGTCTACCTTGTACACATTACTACAGTAAATAGATGATGGGTCATCCTATTTGAAGGCCTTTTTTATGGATCTGTGCTGTGCATTGAAAATTTTGGGATCGTTAATCAGTTAAAAGAACAACTTTTTTGCTTTGTATGCATCAGGTGTTAGCGTGATCGGTGTTTCCCCAAGAAAGGGGGAAAAGACCACAAGGAAAAGTCATTTGGAAATGTGAAAACGGTTTCTACGATTAGACTTGATACCGG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00270	76930	79540	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000270s00013277.1	PF00439.20	Bromodomain	144	183	2.30E-07
Glyur000270s00013277.1	PF00439.20	Bromodomain	182	211	9.60E-05

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	50.437
SRR1783600	control	49.293
SRR1783602	moderate drought stress	39.674
SRR1811619	moderate drought stress	38.188

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	148.010
DRR006520	Root Summer glycyrrhizin high producing strain	147.350
DRR006521	Root Winter glycyrrhizin high producing strain	21.022
DRR006522	Root Winter glycyrrhizin high producing strain	19.771
DRR006523	Root Summer glycyrrhizin low producing strain	202.265
DRR006524	Root Summer glycyrrhizin low producing strain	201.836
DRR006525	Leaf Summer glycyrrhizin high producing strain	81.232
DRR006526	Leaf Summer glycyrrhizin high producing strain	81.626

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	130.484
SRR2868004	Drought Stress (root)	155.926
SRR2967015	Control (root)	212.387

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	231.025
SRR9715740	Leaf	158.346
SRR9715741	Leaf	190.109
SRR9715739	Root	205.435
SRR9715742	Root	285.347
SRR9715743	Root	276.473

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	134.232
SRR8749028	MeJA induced 9h	168.775
SRR8749029	MeJA induced 9h	104.371
SRR8749030	Uninduced	151.534
SRR8749031	Uninduced	193.395
SRR8749032	Uninduced	123.778

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	125.111
SRR8400027	Control - Root	148.766