Gene detail

Gene detail information of Glyur000270s00013276

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT5G64420.1	DNA polymerase V family
NR	XP_003543126.1	PREDICTED: DNA polymerase V-like isoform 1 [Glycine max]
trEMBL	tr\|I1M2K6\|I1M2K6_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA13G32760.1}

Sequence

Transcript Sequence

>Glyur000270s00013276.1
CTCACTTGTCTAAGTTGTCTTGTCCCCCTATAACATTGGCACTGTGGAAGTGACTCTGAGGTTTAAGTGTTTAACCCTAAAACCAAAGCCGCAACCACCACTCTCTCTGCAATTCCTCTTCACTCTGTTGCACGGCACAATGGGTAGCAGTAGTAAGAAACGGAACTCTGTTTCCGAAGAGGAACACGAGAATAGGGTTGAAGCAGACACCAACAACGATTCCTCGAAACCCCTCAACAAAAAACCGAAGAACACCGACGGTTCCGCCGCGCCATCTTCCACGAAACCAATGGAGAGCAAGAAGAAAAGGAAGGCTTTCGACAAGGAGAGGCGTCGCGCCGAAGCAGAAGCCAAACCCGAAGCTACAGAATCGGAGCCCAAACCTGCGGCCCAGTCTCCGAGCAGCAGCGGCAGTGGTTCTCTTCCGGAGTTTCACATTGGCGTGTTCAAGGACTTGGCGGCTGCGTCGGAGTCGGCGAGGGAAGCCGCGGCGAAACAAATGGTGACGGAGTTGAAGGAAGTTCAGAGTGCTTACGATGGGCTTGAGGAGAAGGAGATTGGTGACGGTGGCTTCAAGTTGGAAGCTGAGAAAGACGATGGATTGGATGATTGTGCACCCTCTNTTAGATATGCTATTCGCAGGCTTATTCGTGGTGTCTCTTCTTCAAGAGAGTGTGCACGACAAGGTTTTGCTTTAGGTTTAACAGTTTTAGTTGGCGCTATCCACAAAATCAGGGTTGAATCGTTCCTTAAACTTGTAGTAGGTTTATTGGAAGTAACTTCATCAATGAAGGGTCAGGAAGCAAAAGATTCTCTGCTGGGCCGCTTATTTGCTTATGGTGCTTTGGGTCGATCAGGAAGACTTATTCATGAATGGAGTATGGATAAAGACACTCCATACATAAAAGAATTTGTCAGTGTACTTATCTCTCTTGCAAATAAGAAGCGGTACTTGCAAGAGCCTGCNGTCTCAATAATTTTAGACTTGGTTGAAAAGTTGCCTGTTGAAGCAGTGATGAATCATGTTATCGAAGCTCCCGGGCTCCGGGAGTGGTTTGATGCTGCTATAGAAGTTGGAAACCCTGATGCTTTGCTCCTTGCTTTAAAACTTCGAGAGAAGATTTCTATTGACAGCTCTATATTTGGGAAACTACTGCCAAATCCATTCAGCTCTAGCCAGCTTTTCTCCTCTGATCACCTATCCTCCCTGAGTAATTGCTTGAAGGAATCAACCTTCTGTCAGCCTCGTGTTCACAGTGTCTGGCCTGTTTTGATAAATATTCTTTTACCTAATACTGTTTCGCAATTAGAAGATGCAGCATCAGCTTCAAATTCATTAAAGAAACACAAAAAGAATCGAAAATCTAGCTCTTCTGATGAAGAAATTGTGAAGAATCTCAAGTCTTTTTGTGAAATAATTATNGAAGGATCCCTCCTCTTTTCATCTCATGACCGTAAGCACTTGGCTTTTGATGTTCTGTTTCTTCTTCTCCAAAAGCTGTCTGCATCTTTAGTTCCAGTTGTTCTTTCAAACAAAGTTGTTCAATGCTTGGTGGATGCAATATCNACAACAAACACATGGCTATATAAANTTGCCCAACATTTTCTCAAACAGTTGTCAGATTGGGTGGGAGATGATGATGTCAGAAGAGTTGCTGTTATAGTGGCTCTACAGAAGCACAGCAATGGAAGATTTGATTGTACTACACGGACAAAACATGTTAAAAATTTCATGTCACAGTTCAAAACGGAACCTGGTTGCATGCTTTTTATTCAGAACTTGATGAACCTGTTTGTGGATGAAGGTAATGTCTCGGAGGAACCTTCAGACCAGAGCCAAACAACAGATGAAAACTCTGAAATAGGCTCTATTGAGGATAAAGATTCTCCTGTGAGCAATGGGAATTCTGACTTTTTGAAGAGTTGGGTTATAGAATCCCTTCCCAGTATTTTGAAATACTTGAAGCTGGATCATGAAGAGAAGTTCCGAGTACAAAAAGAAATCATGAAATTTCTGGCTGTTCAGGGTCTGTTCACTGCATCTCTTGGCACTGAAGTGACTTCATTTGAGTTACAGGAGAAATTCAGGTGGCCAAAATCTCCCACATCAAATGCTCTTTGCAAGATGTGTATTGACCAGCTGCAGTTGTTGTTGGCAAATGCTCAGAAGGGAGAGGGCCCACGTCCTTTGACTAATAGCATTGAGCCAAATGATTTNGGTTCATACTTCATGAAGTTCTTCAGCACCTTGCGCAACATTCCTTCAGTTTCCCTCTTCCGATCTTTAGATGATNAAGATGAAAAAGCAGTGAAAAATTTGCAAGCAATGGAAGCAAGATTATCCAGAGAGGAAAGGAGTCACGGCTGCATTGCTGATGCAAATAGATTGCATGCACTGAGATACTTGCTTATCCAGTTGCTCCTGCAAGTGCTTCTTCATCCAAGGGAGTACTCAGAAGCTGCATCTGAACTCATCATCTGTTGTAAGAAAGCATTTTCTGCTTCTGATGCTCCTGATTCCTCTGGAGAAGAGGATTTGGAGGTTGATGACACACCTGAATTNATGGATGTTCTTGTGGATACATTACTCTCTCTGCTTCCACAGTCATCAGCTCCTATGCGGTCTTCTATTGATCAGGTATTTAAATATTTTTGTGGTGATATCACCGAGGATGGACTGATGCAGATGTTGCGAGTCATCAAGAAAAATTTAAAACCTGCAAGACATCCAGATGCAGCGAGTGAAGATGACGATGATGATGACTTCATCAATATCGAAGATGAAGAAATTGATCAAGCTGAGACAGGTGAAACTGGTGAGAGTGATGGGCAGACAGATGATTCTGAGTCCGTGGTTGAGGCAGAGGAAACTGGTCATGGCCATTCNGAAGCTTCCGATGNTTCTGATAGTGGGATGGATGATGATGCAATGTTCAGGATTGATACATATCTTGCTCAGATGTTTAAAGAGAAGAAAAATCAAGCTGGAGGTGAAACTGCTCATTCCCAGCTTGTGCTGTTCAAACTTCGCATCCTTTCATTGTTGGAAATTTTCCTTCATGAAAATCCAGGCAATTCTTGGGCTAGCTTTGTGTTTTTTATGCTGCTACTCTCCAGTAAGCCTCAGGTTCTTACAGTGTACTCACATTTGGCTCGGGCCTTTGTTAACCCACATACCGCAGAAGTTAGTGAGCAGCTTGGTCAGCGTATATGGGGAATATTACAAAGGCAAATATTCAAAGCAAAGGATTATCCAAAGGGTGATGGAGTCCAATTGTCNACTCTAGAATCTCTGTTGGAGAGAAGTTTGAAATTAGCATCAAAACCACTTAAAAGACAGAAATCTGCAACTAACCCGTCAAAGCAATCAGCTGCCTTGAACCGACAGAAAATGGTTTCTTCCCTTGCCCAAACTTCAACCTTCTGGCTTTTGAAAATTATTGATTCAAGAAATTTCTCGGAATCCGAACTGCAGAGGATTGTTCAAATTTTCCAGGAAGTACTGGTGGGGTATTTTGACAGTAAGAAGTCTCAGATAAAATCTGGATTTTTAAAAGAAGTATTTCGAAGAAGACCATGGATTGGACATGCTGTATTTGGCTTTGTTTTGGAGAGNTGTGGAAGTGCCAAGTCAGACTTTCGACGAGTGGAAGCACTTGATTTGATAATGGAAATATTGAAGCCACTAGCATCGGGGAGCGACCCGACGAAAACAAGTTGCAAATACAGAGCCGTCCAACAAGCAATAATCTGA

Protein Sequence

>Glyur000270s00013276.1
MGSSSKKRNSVSEEEHENRVEADTNNDSSKPLNKKPKNTDGSAAPSSTKPMESKKKRKAFDKERRRAEAEAKPEATESEPKPAAQSPSSSGSGSLPEFHIGVFKDLAAASESAREAAAKQMVTELKEVQSAYDGLEEKEIGDGGFKLEAEKDDGLDDCAPSXRYAIRRLIRGVSSSRECARQGFALGLTVLVGAIHKIRVESFLKLVVGLLEVTSSMKGQEAKDSLLGRLFAYGALGRSGRLIHEWSMDKDTPYIKEFVSVLISLANKKRYLQEPAVSIILDLVEKLPVEAVMNHVIEAPGLREWFDAAIEVGNPDALLLALKLREKISIDSSIFGKLLPNPFSSSQLFSSDHLSSLSNCLKESTFCQPRVHSVWPVLINILLPNTVSQLEDAASASNSLKKHKKNRKSSSSDEEIVKNLKSFCEIIXEGSLLFSSHDRKHLAFDVLFLLLQKLSASLVPVVLSNKVVQCLVDAISTTNTWLYKXAQHFLKQLSDWVGDDDVRRVAVIVALQKHSNGRFDCTTRTKHVKNFMSQFKTEPGCMLFIQNLMNLFVDEGNVSEEPSDQSQTTDENSEIGSIEDKDSPVSNGNSDFLKSWVIESLPSILKYLKLDHEEKFRVQKEIMKFLAVQGLFTASLGTEVTSFELQEKFRWPKSPTSNALCKMCIDQLQLLLANAQKGEGPRPLTNSIEPNDXGSYFMKFFSTLRNIPSVSLFRSLDDXDEKAVKNLQAMEARLSREERSHGCIADANRLHALRYLLIQLLLQVLLHPREYSEAASELIICCKKAFSASDAPDSSGEEDLEVDDTPEXMDVLVDTLLSLLPQSSAPMRSSIDQVFKYFCGDITEDGLMQMLRVIKKNLKPARHPDAASEDDDDDDFINIEDEEIDQAETGETGESDGQTDDSESVVEAEETGHGHSEASDXSDSGMDDDAMFRIDTYLAQMFKEKKNQAGGETAHSQLVLFKLRILSLLEIFLHENPGNSWASFVFFMLLLSSKPQVLTVYSHLARAFVNPHTAEVSEQLGQRIWGILQRQIFKAKDYPKGDGVQLSTLESLLERSLKLASKPLKRQKSATNPSKQSAALNRQKMVSSLAQTSTFWLLKIIDSRNFSESELQRIVQIFQEVLVGYFDSKKSQIKSGFLKEVFRRRPWIGHAVFGFVLEXCGSAKSDFRRVEALDLIMEILKPLASGSDPTKTSCKYRAVQQAII

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00270	69656	76397	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006351 transcription, DNA-templated

molecular_function

GO:0003677 DNA binding

GO:0003887 DNA-directed DNA polymerase activity

GO:0005488 binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000270s00013276.1	PF04931.8	DNA_pol_phi	163	226	2.60E-08
Glyur000270s00013276.1	PF04931.8	DNA_pol_phi	240	973	1.70E-159

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	8.960
SRR1783600	control	8.862
SRR1783602	moderate drought stress	10.843
SRR1811619	moderate drought stress	10.622

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	11.264
DRR006520	Root Summer glycyrrhizin high producing strain	11.188
DRR006521	Root Winter glycyrrhizin high producing strain	7.421
DRR006522	Root Winter glycyrrhizin high producing strain	7.036
DRR006523	Root Summer glycyrrhizin low producing strain	10.132
DRR006524	Root Summer glycyrrhizin low producing strain	10.543
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.194
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.068

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	19.346
SRR2868004	Drought Stress (root)	15.128
SRR2967015	Control (root)	16.217

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	6.272
SRR9715740	Leaf	8.333
SRR9715741	Leaf	7.832
SRR9715739	Root	1.961
SRR9715742	Root	18.435
SRR9715743	Root	14.999

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	15.232
SRR8749028	MeJA induced 9h	13.008
SRR8749029	MeJA induced 9h	5.895
SRR8749030	Uninduced	1.345
SRR8749031	Uninduced	0.532
SRR8749032	Uninduced	1.119

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	17.985
SRR8400027	Control - Root	16.201