Gene detail

Gene detail information of Glyur000270s00013273

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G40780.1	2.00E-49	Nucleic acid-binding, OB-fold-like protein
NR	XP_004502815.1	6.83E-90	PREDICTED: probable RNA-binding protein EIF1AD-like isoform X1 [Cicer arietinum]
Swissprot	tr\|Q3EBI7\|FB130_ARATH	5.00E-07	F-box protein At2g40910
trEMBL	tr\|V7AS60\|V7AS60_PHAVU	8.00E-89	Uncharacterized protein {ECO:0000313\|EMBL:ESW08404.1}

Sequence

Transcript Sequence

>Glyur000270s00013273.1
CGCATGTTAAATTGAGATTAGACTGGGTTTATATTTTCAACTTTAATTAATTAATGATTAATGATTTGTTTGAAAAAAATTAATGATTAATGATATATGGTAAAAAACAAACGAGAGCCACAATTAGTCCGTTAGAAAGCAGAAACCCTATCCAAAATTGGATCTCCTTCTCACCGCCGCACCCTTCTCCACTATCTGCGCTCGGCCGCCGGCAACACCGTGAGTCGGCGAAATTGGATCTCCCTCTCACCGCCGGCCTCCAGTCTGTGGTTTGAGTCTCAGTGTAGGCAAGCTAACAAAATATCAAAGGAAAGAAAACCCAAATTCAGTTACCGCAGATCACCCAGAAGCCCAGTTACTGAGAGTTTTGTGACAAACCTTATCAACAAGAAATTAAGGTGGCCATGAGAGGAGGAAGGAAGAATTTGAAGAGGGCAACGGAGGAAAAGCATGTAACTCTTCAAGATGGGCAAAGCATCGTGCAGGTGGTGTCTCTTCGAGGCTCCAATCTCATCGAGGTCATGGATGCACATGGTGAGAAATCACTAGCTCTATTTCCTGCGAAATTTCAGAAAAGCATGTGGATAAAACGAGGAAGTTTCGTTGTTGTTGATGAAAGTGGAAAGGAAAAGGCTCTTGAATCAGGTAGCAAGGTTGCATGTCTTGTTTCTCAAGTTCTTTACCATGAACAAGTTCGAGCACTACAAAAATCCTACAAAAATCCCCAGAATGGTATGCTCTTGCCTGAAATTTTTAAATCTGGGATGGTAGATGATTCAAATGAAACAACCACTTCCCANCAAGAGAATGAGATGGACGCAAGTGATGATGATGGACTGCCTCCATTGGAAGCCAATACAAACAGGATGAGACCTTTTGGGTCACAAGCTGATGAAGATTTAGAATCTAATTCAGATACAGATGATTGAATCATATAGTTGGGCTCCCCATACTTGCATATGGATGATTGCATTCAAGTTCAACCAACACTGTATGTACNCAAAGAATGTTCTTGTCCTATCTTCGC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00270	58258	61618	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006413 translational initiation

molecular_function

GO:0003723 RNA binding

GO:0003743 translation initiation factor activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000270s00013273.1	PF01176.14	eIF-1a	21	74	4.10E-16

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.089
SRR1783600	control	5.933
SRR1783602	moderate drought stress	3.706
SRR1811619	moderate drought stress	3.236

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	14.892
DRR006520	Root Summer glycyrrhizin high producing strain	13.608
DRR006521	Root Winter glycyrrhizin high producing strain	18.318
DRR006522	Root Winter glycyrrhizin high producing strain	19.220
DRR006523	Root Summer glycyrrhizin low producing strain	13.414
DRR006524	Root Summer glycyrrhizin low producing strain	13.481
DRR006525	Leaf Summer glycyrrhizin high producing strain	11.838
DRR006526	Leaf Summer glycyrrhizin high producing strain	12.819

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	12.139
SRR2868004	Drought Stress (root)	14.129
SRR2967015	Control (root)	13.853

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	11.843
SRR9715740	Leaf	14.798
SRR9715741	Leaf	14.320
SRR9715739	Root	1.007
SRR9715742	Root	2.760
SRR9715743	Root	2.757

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	20.901
SRR8749028	MeJA induced 9h	20.370
SRR8749029	MeJA induced 9h	26.806
SRR8749030	Uninduced	10.621
SRR8749031	Uninduced	9.649
SRR8749032	Uninduced	19.236

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	10.183
SRR8400027	Control - Root	9.568