Gene detail

Gene detail information of Glyur000270s00013270

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT5G64410.1	oligopeptide transporter 4
NR	XP_003593303.1	Oligopeptide transporter [Medicago truncatula]
Swissprot	tr\|Q9FME8\|OPT4_ARATH	Oligopeptide transporter 4
trEMBL	tr\|A7UQT0\|A7UQT0_MEDTR	Peptidase aspartic, active site; Oligopeptide transporter OPT superfamily {ECO:0000313\|EMBL:ABN05713.1}

Sequence

Transcript Sequence

>Glyur000270s00013270.1
CCGCAGAATAGATATATATTATTACGGCTAAACCAACTTGCCACTACCTTACCAAAATAATAATGCGATCTGCAAGCGGATAAAAATGAGAAACCATAAACTAAAAATAAAATCCAAACACCGATAAATAGATCCTAGATATAGCTAGCTAGCTAGCTGCTTTGGGGATTGGGATCAATTTGCTCTCATCGCCAACGAAAGTAGACATCAGAGAAGAGAGTGGTCAGTGTAGGGACCAAAACAAACCATACCAACCAACCAACCACAGGAGGAAGTGAAGAAGTCGCAAGTCCTTTATAATAGTACTATTTCTTCCAAATCCAATGTAAGAAAAAACAGTTAGTTACCAAAATTCTTCAAAACCAAAAGCCACCGCCACTCTCTCCTCTTCTATCTCATTCACTCTCTGAAACCAAACCAACCATGATGAGCTTGGACACAGANAAGAAGGCAACCCCAACCACTGAGGTGGNGGAATTAGATGATGACGTGTCTCCCATTGAGGAGGTTCGTCTAACGGTTTCCAACACTGACGACCCGACCCAGCCGGTATGGACCTTCCGGATGTGGTTCCTGGGTCTCATCTCATGCTCCCTCCTTTCTTTTCTAAACCAGTTCTTCGCCTACCGAACGGAGCCACTCATCATTACCCTCATCACCGTTCAGGTCGCAACCCTCCCCATCGGCCACTTCATGGCGGCGGTTCTGCCCGCCACCAAGTTCAGGATCGGGTCGAAGCAATTCTCGTTCAACCCGGGCCCGTTTAACATGAAGGAGCACGTGCTCATCACCATATTCGCCAATGCCGGAAGCGCATTNGGATCCGGGTCACCCTACGCCGTCGGAATAGTCAACATAATCAAAGCCTTCTATGGCCGCTCCATATCCTTCCATGCTTCCTGGCTTCTCATCATTACCACTCAAGTTCTGGGATACGGATGGGCCGGGTTGCTGAGGAAGTACGTGGTGGAACCGGCCCATATGTGGTGGCCCAGCACCCTCGTCCAGGTCTCCCTTTTCCGGGCTTTGCATGAGAAAGATGATGACCACAGACTCTCAAGGGCAAAATTTTTCTTTATTGCACTAGTNTGCAGTTTTTCCTGGTATGTGATCCCAGGATACTTCTTCACAACACTCACAAGCATATCATGGGTCTGTTGGGTATTCTCCAAGTCAGTGACAGCTCAGCAGATAGGCTCAGGCATGAAAGGCTTGGGACTTGGAGCCCTCACACTTGACTGGTCTGCTGTGGCATCATTCTTGTTCAGCCCTCTCATCTCACCCTTCTTTGCCATTGTCAATGTTTTTGTGGGTTATGCATTAATAGTCTATGTTGTGATTCCCATAGCATACTGGGGCCTTGATGTGTACAATGCAAAAAGGTTCCCCATTTTCTCCTCACNCTTGTTCACAGCTCAAGGCCAAAGTTACAACATATCTGCTATTGTCAATGACAAGTTTGAGCTAGATATTGCACAGTATCAAGAGCAAGGAAGAATTCATCTAAGTGTGTTTTTTGCTCTCACTTATGGCTTTGGATTTGCCACCATAGCATCCACCCTCACTCATGTTGTTTGCTTCTATGGACGGGAGATTATGGAGCGATATCGTGCATCTTCCAAGGGTAAAGAAGATATCCACACAAAATTGATGAAAAGATACAAAGACATACCTTCTTGGTGGTTTCATGCGTTGCTGGTTGTGACACTTGCCGTTTCTCTCTTGCTGTGCATCTTTCTAAATGACCAGACACCGGGATTGAATATCATTACTGAGTATGTCTTCGGTCTCATTTACCCTGGAAGACCAATAGCAAATGTGTGCTTCAAAACCTATGGTTACATTAGCATGGCGCAAGCTGTCTCCTTCCTTAGTGATTTCAAGCTTGGACACTATATGAAAATCCCTCCAAGATCAATGTTCTTATTCATAGGAACAATGCTAGCTGGAACCATCAACATTGGGGTAGCATGGTGGTTGCTGAACTCTATTGAGAATATATGTCATGATGATCTCCTTCCAGCAGGCAGTCCCTGGACATGCCCAGGTGACCGCGTTTTCTTCGATGCATCAGTTATTTGGGGTCTGGTAGGACCAAGAAGGATCTTTGGCTCTCAAGGAAACTACAGTGNAATGAATTGGTTCTTCCTTGGAGGTGCAGTGGGACCCATAATTGTTTGGCTATTGCATAAAGCATTCCCTAAACAGTCATGGATTCCCCTAATTAACCTTCCGGTTCTCCTTGGGGCAACTGGAATGATGCCACCGGCAACACCATTGAACTACAATGCCTGGATCTTTGTGGGGACAGTTTTCAACTTCTTTGTCTTCCGTTACAGAAAGAAATGGTGGCAGAGGTACAACTATGTTCTATCAGCAGCACTTGANACCGGGGTTGCTTTTATGACTGTCTTGCTCTACTTTTCACTGAGTTTGGAGAACAAAAGTATTACTTGGTGGGGAACTGGTGGTGAACATTGTCCACTGGCATCTTGCCCAACAGCAAAGGGCATTGTGGTTGATGGTTGCCCAACAAACTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00270	46296	52821	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055085 transmembrane transport

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000270s00013270.1	PF03169.10	OPT	44	443	1.20E-99
Glyur000270s00013270.1	PF03169.10	OPT	442	668	2.40E-64

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	16.881
SRR1783600	control	16.866
SRR1783602	moderate drought stress	10.886
SRR1811619	moderate drought stress	11.059

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	10.907
DRR006520	Root Summer glycyrrhizin high producing strain	10.822
DRR006521	Root Winter glycyrrhizin high producing strain	0.961
DRR006522	Root Winter glycyrrhizin high producing strain	1.066
DRR006523	Root Summer glycyrrhizin low producing strain	7.258
DRR006524	Root Summer glycyrrhizin low producing strain	7.316
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.849
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.159

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	22.513
SRR2868004	Drought Stress (root)	26.163
SRR2967015	Control (root)	30.475

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	19.588
SRR9715740	Leaf	9.638
SRR9715741	Leaf	27.380
SRR9715739	Root	10.921
SRR9715742	Root	21.751
SRR9715743	Root	18.698

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	8.140
SRR8749028	MeJA induced 9h	11.614
SRR8749029	MeJA induced 9h	20.606
SRR8749030	Uninduced	2.721
SRR8749031	Uninduced	5.566
SRR8749032	Uninduced	5.306

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	25.578
SRR8400027	Control - Root	22.677