Gene detail

Gene detail information of Glyur000269s00013920

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G23850.1	0	AMP-dependent synthetase and ligase family protein
NR	XP_003517503.1	0	PREDICTED: long chain acyl-CoA synthetase 4-like [Glycine max]
COG	YP_003120813.1	1.00E-78	AMP-dependent synthetase and ligase [Chitinophaga pinensis DSM 2588]
Swissprot	tr\|Q9T0A0\|LACS4_ARATH	0	Long chain acyl-CoA synthetase 4
trEMBL	tr\|I1JAD2\|I1JAD2_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA01G43470.2}

Sequence

Transcript Sequence

>Glyur000269s00013920.1
AAACGATACCTAATTCGTTTATAAGTCCTTTTGCAAGCGAAGAAGCGGGGTCAGGTCCCATACCGTACCACAACCACCGTCCACTCGCTCATCTTCGAGTCAAATACAGACGAGACGACGTTAACTGAACTTGCGTTTAAACTTCAAATTTCTCTCTTGTCTTTCTCTGCTTATATCTCCATTCCAATTCCAATTCCCATACACTTTGGCTTTGGTATTCGTCGTGGTTCTTCTTTTCTTCGGTCGAGATTGAATGGCGCAGAAGAGATTCATCATTGAGGTCGAAAAAGCAAAGGAGGCGAGTGGAGAGAGGCCATCGAGAGGACCTGTGTACCGTAGCATCTTCGCCAAGGATGGATTCCCTGCTCCTATCGAAGGTCTCGATAGCTGCTGGGATGTTTTCCGACTGTCTGTTGAGAAATATCCAACAAAGCCTATGCTAGGTCGCCGGGAAATTGTGGACGGGAAGCCTGGCAAGTACAAGTGGCAAACTTACAAGGAAGTATATGATCTGGTGATGAAAGTTGGAAATGCCATCCGCAGCTGTGGTCATGGGGAAGGTGTAAAATGTGGTATTTATGGTGCCAATTGTGCAGAGTGGATTGTGAGCATGGAGGCCTGCAATGCTCATGGACTTTATTGTGTTCCTTTATATGATACCTTAGGTGCTGGGGCTGTAGAATTTATTATGTGCCATGCAGAGGTGTCAATTGTGTTTGCAGAAGAAAAGAAGATACCTGAGCTATTGANGGCATTTCCAAATGCAGCAAAGTATCTCAGGACACTTGTGNGCTTCGGGAAGGTTACCCCTGAACAAAAGCGAGAAGTTGAAAAGTTTGGGTTGGCAATATATTCATGGGATGAATTTTTACAAGTGGGTGAAAATCAGAGTTTTGATCTACCTGTGAAGAAAAGGAGTGACATCTGTACAATAATGTATACTAGCGGAACTACTGGTGACCCCAAGGGTGTGTTGATATCCAATGAGAATATTATTACCCTCTTAGCTGGGATTAAGCGAGTGTTGGAGAGTGTCAATGAACGATTGAGTGAGAAGGATGTATACATGTCATACCTTCCTCTTGCACATATCTTTGATAGGGTCATTGAGGAGACATTCATATGGCACGGTGCCTCTATAGGTTTCTGGCGTGGGGATGTCAAATTGTTAATTGAAGACCTTGCGGAGCTAAAACCAACTATTTTCTGTGCTGTACCCCGTGTGCTTGATAGAGTGTATTCAGGTTTGACACAGAAGATTTCTTCCGGGGGCTTTCTAAAGCAGACATTATTCAACTTTGCTTACTCATATAAGCTGCGTAACATGAAGAAAGGGANCAAGCATACAGAGGCATCTCCACTTTTTGATAAAATTGTATTTGATAAGGTAAAGCAAGGTTTAGGGGGTAATGTACGTCTTATTTTGTCTGGAGCAGCACCACTTTCTGCGCATGTGGAAGGTTACTTACGGGTGGTGACTTGTGCTCATGTCCTACAAGGATATGGTCTGACTGAAACCTGTGCGGGAACCTTTGTCTCCTTACCAAATGAACTGGACATGCTTGGAACAGTGGGCCCTCCTGTACCAAATGTGGATGCGTGCCTGGAATCTGTTCCTGAAATGGGATACGATGCCCTTGCAAGCACCCCGAGAGGAGAAATATGTGTAAGGGGAAATACCTTGTTTTCGGGGTACTACAAACGTGAAGACCTCACGAAAGAGGTTCTTATTGATGGATGGTTCCATACAGGGGATATTGGAGAGTGGCAACCTAATGGAAGCATGAAAATTATTGATCGGAAGAAGAATATATTTAAGCTTTCACAAGGAGAATATGTTGCTGTTGAAAACCTGGAGAATATTTATGGTCAACTTTCTTGTATTGAATCTATATGGATTTATGGAAACAGTTTCGAGGCCTTCCTTGTTGCTGTTGTTAACCCCAGCAAGCAAGCACTTGAACGTTGGGCAGAAGAAAATGGTATATCCATGGACTTCGATTCTCTCTGTGGAGATTCTAGAGCAAAAAGTTACATACTTGAAGAGCTCTCAAAGATTGCGAAGGAAAAGAAGTTGAAAGGCTTTGAGTTTATAAAAGCAGTTCATCTTGACCCAGTTCCATTTGACATGGAACGTGACCTTACAACTCCAACATATAAGAAGAAGAGGCCTCAGTTGCTTAAATACTATCAGAATGTGATTGATAACATGTACAAGAAGTAAACCCAGTGCTTGAGAAATGCTTTGGGAGTTAATGCCATGTCGTGTAGATAATTTATTTTCTGCATGTGATTCTACTTGCATCTTCAATTGTTTCCTTTTGGACTATCTGTACATATGATTATTGAGAAATAACAGACACCTTATATGCCCTGCTCAACCGTAGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00269	201228	209630	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01897	ACSL, fadD	EC:6.2.1.3	Fatty acid metabolism	map01212
			Fatty acid biosynthesis	map00061
			Fatty acid degradation	map00071
			Peroxisome	map04146
			Quorum sensing	map02024
			Adipocytokine signaling pathway	map04920
			PPAR signaling pathway	map03320

Gene Ontology

biological_process
GO:0008152 metabolic process

molecular_function
GO:0003824 catalytic activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000269s00013920.1	PF00501.23	AMP-binding	53	524	7.80E-92

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	31.194
SRR1783600	control	31.127
SRR1783602	moderate drought stress	33.302
SRR1811619	moderate drought stress	32.875

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	40.509
DRR006520	Root Summer glycyrrhizin high producing strain	40.372
DRR006521	Root Winter glycyrrhizin high producing strain	84.045
DRR006522	Root Winter glycyrrhizin high producing strain	81.757
DRR006523	Root Summer glycyrrhizin low producing strain	24.549
DRR006524	Root Summer glycyrrhizin low producing strain	24.783
DRR006525	Leaf Summer glycyrrhizin high producing strain	40.690
DRR006526	Leaf Summer glycyrrhizin high producing strain	40.198

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	201.422
SRR2868004	Drought Stress (root)	223.690
SRR2967015	Control (root)	218.490

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	77.104
SRR9715740	Leaf	71.544
SRR9715741	Leaf	98.338
SRR9715739	Root	13.618
SRR9715742	Root	52.644
SRR9715743	Root	45.121

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	67.074
SRR8749028	MeJA induced 9h	105.055
SRR8749029	MeJA induced 9h	64.397
SRR8749030	Uninduced	74.427
SRR8749031	Uninduced	91.152
SRR8749032	Uninduced	64.965

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	162.249
SRR8400027	Control - Root	155.594