Gene detail

Gene detail information of Glyur000269s00013917.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G23860.3	4.00E-121	PHD finger protein-related
NR	XP_004511517.1	0	PREDICTED: putative E3 ubiquitin-protein ligase UBR7-like [Cicer arietinum]
trEMBL	tr\|I1JAE1\|I1JAE1_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA01G43520.5}

Sequence

Transcript Sequence

>Glyur000269s00013917.1
CCCCCTATATAGCCCTAGGCCCCTAACTCCTCATAATGTTAAAAATCACAAAACGCATTACGCACCTATATCTATACGCTCTGCTCAATACTCCAAANCCTCTCTCTCTTTCCTCTCCTCCGCCACAGCCGTACATTTCTTCTGCAGCTTCAACGCTACCTGATTAAGCAATTTCTGCATTCGCTTCGCTAACGCCTCAGTCTCAAAATTTGTATGTATTAGGAACGGATCGTGAAACTTAGAAACCAGAAGCCGGAGGTAGAAATGGACGGTGCGTTTGACGATGAAGCTGAACCGGCCGTAACAATCGGCGAGTACCTCGAGGAAGTTGAGGAACGGGAGCTGGAAGCTGATTTAGTTTTGGGGGGCGATGATGGCAAGGAGTGTACCTATAGCAAAGGTTACATGAAAAGGCAGGCGATTTTCTCTTGCATCACCTGCACCCCAGATGGGAATGCTGGAGTTTGTACTGCATGCTCATTGTCTTGCCATGATGGTCATCAGATTGTGGAACTATGGACAAAAAGAAACTTCAGGTGTGATTGTGGGAATTCAAAGTTTGGTGAATCCTACTGCAAGATTTTTCCAAATAAAGATGTAGAGAATGTTGAGAATTCATACAATCACAACTTTAAAGGTTCGTATTGCACATGTGGCCGCCCTTATCCAGATCCAGATGCTGAAGAACAGGTAGAGATGATACAGTGCTGTCTATGTGAGGACTGGTTTCATGAGGAGCATCTTGGTCTCGAGTCTTCTGATGAGATTCCCAGAGATGATGAAGGAGAGCCGCTTTATGAGGATTTCATATGTAAGGCATGCTCTGAAGTATGTTTCTTTCTAAAATTATATCCTGAAGTAATATGGGCAGCGGGAAAGCAGCCAGATGCTACTGTTCAAGTTAGCAAGGACAAAGGTGTTTTGGAAGAAAAGCCTTCAACTTGTGGGTCTGAAAAGCAAATGGGTGATACTTCTTATAATTCTCCTAAAATTGATGACGCACAAGCTACTGTTGATTCTGAATCTACATCTGGTGGGAAGGGTTTGCCTCAGGAAGGAAATTGTCATAATAGTATGGCTTTAAACCAATGCACAAAAGGCACCGACTTGCGTGTTGATGATTGTCTCCTTGGTGTTAACATTGTTGCTGCTTCCCCAGTTATACATGGTAAACCAATTTTCCTTTCCAAAAATTGGAGAGATGCTCTATGCAAATGCAATAATTGCTTGGAGTATTACCATCAGAAGCGGATTGCTTTTATACTTGACAAGGAAGACTCCATTGTGGAGTATGAGAAAATGGCCAAGCAAAAGAGAGAAGAAAAGTTGCAGCAACAGGAGGGTGCTGAGTTGAGTTTTTTTAATAAACTTGGACATGTAGAGAAAGTGGAGATCTTGAAGGGCATTGAAGATATGAAGGATGGGCTTCGTGCTTTCCTGGAGTCCGCAGACTCGTCAAAGCCAGTTACTGCTGCTGATATCCACCAGTTTTTTGATGACATTAAGAATAAGCGTCGCCGTGTACAGTGAGTTTTTGTTGTCTTGGTACTTTAAAGGCGTATTGGTCCAAACTTGCAAACCGTTTTAAGTTTATTTGTGTAATCTGATGTTCACAAGATCTGCATGCTTTATGATAATTATGTTACAATGCTCTACTTGTATTAACTCATGTTGACTTAGTAGACTCTACTTTGGTTC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00269	179552	185235	-

Gene family

Gene family	subfamily
Ubiquitin Family	UBR_box

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0005515 protein binding

GO:0008270 zinc ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000269s00013917.1	PF02207.15	zf-UBR	40	105	1.90E-16

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	43.962
SRR1783600	control	44.428
SRR1783602	moderate drought stress	62.624
SRR1811619	moderate drought stress	61.963

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	57.528
DRR006520	Root Summer glycyrrhizin high producing strain	57.187
DRR006521	Root Winter glycyrrhizin high producing strain	133.810
DRR006522	Root Winter glycyrrhizin high producing strain	130.403
DRR006523	Root Summer glycyrrhizin low producing strain	48.555
DRR006524	Root Summer glycyrrhizin low producing strain	49.460
DRR006525	Leaf Summer glycyrrhizin high producing strain	29.495
DRR006526	Leaf Summer glycyrrhizin high producing strain	29.117

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	49.488
SRR2868004	Drought Stress (root)	52.413
SRR2967015	Control (root)	56.376

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	28.542
SRR9715740	Leaf	37.996
SRR9715741	Leaf	29.725
SRR9715739	Root	20.760
SRR9715742	Root	37.495
SRR9715743	Root	36.030

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	83.273
SRR8749028	MeJA induced 9h	70.809
SRR8749029	MeJA induced 9h	66.066
SRR8749030	Uninduced	42.652
SRR8749031	Uninduced	52.336
SRR8749032	Uninduced	57.107

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	75.172
SRR8400027	Control - Root	71.786