Gene detail

Gene detail information of Glyur000269s00013908

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G42080.1	0	dynamin-like protein
NR	XP_007158584.1	0	hypothetical protein PHAVU_002G164800g [Phaseolus vulgaris]
COG	YP_002343849.1	2.00E-06	ATP/GTP binding protein [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]
Swissprot	tr\|Q39828\|SDL5A_SOYBN	0	Dynamin-related protein 5A
trEMBL	tr\|V7CMJ2\|V7CMJ2_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW30578.1}

Sequence

Transcript Sequence

>Glyur000269s00013908.1
GTGAGAATCGAGAAAGGATAAGGCAAACGAAAATCTCGCGAGTTGAAGACTTGAGCTGAGCTATATACTCAATCACTCGTTCTCACTGACATATGCCACTTAACCATTCTCTCGCCATTTCAATCTGCAATCAAAACAAGTTCCACACACTATTACACGAGTCTCTCACTTTTCTCACGCTAGCTTTGAAGTTGAAAGTAGAAAGCACAGCACACAAGAGTACAAACTACAAAGAGAGAGCAGTAATAATCTGTGGGAATGGAGAACCTAATATCTTTGGTGAACAAAATCCAGAGGGCTTGCACCGCTTTAGGCGACCACGGCGAAGGGAGTGCCTTGCCCACTCTCTGGGACTCTCTCCCCGCTATCGCCGTCGTCGGTGGCCAGAGCTCTGGAAAGTCCTCAGTGTTGGAGAGCGTTGTTGGCAAGGACTTCTTACCTCGCGGCTCAGGGATTGTTACTCGGCGACCCCTTGTTTTGCAGCTTCACAAGATTGACGAGGGAAGCAGAGAATATGCTGAATTTCTGCACCTTCCTAGGAAAAGGTTCACTGATTTCGCTGCTGTGAGGAAGGAGATTCAAGATGAAACCGATAGAGAGACTGGACGAACAAAACAGATTTCAAGTGTNCCTATTCATCTCAGTATATATTCTCCCAATGTTGTTAACTTGACACTCATTGATCTTCCTGGCCTTACAAAGGTAGCTGTAGAGGGTCAACCGGATAGTATTGTCCATGACATTGAGAATATGGTTCGCTCCTACATTGAGAAGCCAAACTGTATAATTCTGGCTATTACACCAGCCAATCAAGATCTTGCAACATCTGATGCAATTAAAATCTCCCGTGAAGTGGACCCCACTGGTGAAAGGACAATTGGAGTCTTGACAAAGATTGATCTTATGGATAAGGGTACTGATGCTGTTGATATGCTGGAGGGGAGAGCTTATAGGTTAAAGTTTCCCTGGGTAGGCGTTGTCAATAGATCACAAGCAGATATTAACAAGAATGTTGACATGATTGCTGCCAGGCGCATTCAATCACTTATTAGTAAAACAATTGCTGAAATTGAAGCCGAACTGAGTCGTTTGGGAAAGCCTATTGCAGCTGATGATGGGGGCAAGTTGTATGCAATCATGGAAATATGCCGCTCATTTGATCAAATATTTAAAGAACATCTAGATGGCGTGCGACCAGGAGGTGATAAAATTTATAATGTCTTTGACAATCAGCTCCCTGCTGCTTTAAAAAGGTTGCAGTTTGATAAGCAGCTTTCAATGGAAAATATAAGGAAACTTATTACAGAAGCTGATGGGTATCAACCTCATCTTATTGCTCCAGAACAAGGTTACCGTCGCCTCATAGAATCTTCTCTAACTAGTATCAGGGGCCCAGCTGAGGCAGCTGTAGATGCGGTTCATTCCCTATTGAAGGATCTGGTTCACAAAGCTATTAGTGAAACTCTGTTGCTTTCTTATCCATTTGTCCTAAAAGCTATCTCAAGTGTTCCCATTGCACTCCAAGCTCATACATCCAGTGTTGGTTTGGTTGACTCGCAGGAATTGAAGCAGTATCCTGGTCTGCGAGTGGAGGTTGGGAATGCAGCTATTGATTCACTAGAACGAATGAGGGAGGAAAGCAAAAAAGCAACTCTACAGCTAGTTGATATGGAGTGTGGCTATTTGACGGTTGATTTCTTTCGGAGACTTCCTCAAGATGTTGATAAGGGTGGCAATCCTACACATTCAATTTTCGATAGATACAATGATTCATATCTTAGGCGCATTGGAAGCACAGTTTTGTCNTATGTCAATATGGTCTGTGCAACTCTACGGCATTCAATTCCGAAGTCAATTGTCTATTGTCAAGTGCGGGAAGCCAAACGAAGCCTGCTTGATCACTTTTTCACTGAGATAGGCAAAATTGAGTCCAAGCGTCTGTCCTCATTGCTGAATGAGGATCCTGCAATCATGGAAAGACGTAGTGGCCTCGCAAAGAGGCTTGAGTTATACCGGAGTGCNCAAGCTGAGATTGATGCAGCTGCTTGGTCCAATTCTGCAAAACGTGTATTGTCATCTTTACCAGATGTCTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00269	141367	147334	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003924 GTPase activity

GO:0005525 GTP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000269s00013908.1	PF00350.18	Dynamin_N	37	213	7.80E-55
Glyur000269s00013908.1	PF01031.15	Dynamin_M	222	258	3.20E-10
Glyur000269s00013908.1	PF01031.15	Dynamin_M	260	417	2.80E-29
Glyur000269s00013908.1	PF02212.13	GED	504	593	1.80E-18

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	18.747
SRR1783600	control	18.764
SRR1783602	moderate drought stress	22.975
SRR1811619	moderate drought stress	23.118

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	29.786
DRR006520	Root Summer glycyrrhizin high producing strain	29.625
DRR006521	Root Winter glycyrrhizin high producing strain	10.667
DRR006522	Root Winter glycyrrhizin high producing strain	9.251
DRR006523	Root Summer glycyrrhizin low producing strain	22.891
DRR006524	Root Summer glycyrrhizin low producing strain	23.321
DRR006525	Leaf Summer glycyrrhizin high producing strain	11.508
DRR006526	Leaf Summer glycyrrhizin high producing strain	11.559

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	36.995
SRR2868004	Drought Stress (root)	27.082
SRR2967015	Control (root)	31.734

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	19.852
SRR9715740	Leaf	20.376
SRR9715741	Leaf	20.597
SRR9715739	Root	9.231
SRR9715742	Root	24.484
SRR9715743	Root	21.238

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	20.137
SRR8749028	MeJA induced 9h	22.017
SRR8749029	MeJA induced 9h	14.553
SRR8749030	Uninduced	6.008
SRR8749031	Uninduced	2.502
SRR8749032	Uninduced	4.464

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	48.144
SRR8400027	Control - Root	48.737