Gene detail information of Glyur000269s00013907 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G10390.1 | 3.00E-72 | Histone superfamily protein |
| NR | XP_006301260.1 | 2.21E-90 | hypothetical protein CARUB_v10021660mg, partial [Capsella rubella] |
| Swissprot | tr|P68428|H32_WHEAT | 1.00E-92 | Histone H3.2 |
| trEMBL | tr|W5A3T1|W5A3T1_WHEAT | 8.00E-91 | Histone H3 {ECO:0000256|RuleBase:RU004471} (Fragment) |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00269 | 139841 | 140251 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000269s00013907.1 | PF00125.19 | Histone | 58 | 132 | 1.10E-32 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 48.229 |
| SRR1783600 | control | 49.459 |
| SRR1783602 | moderate drought stress | 16.733 |
| SRR1811619 | moderate drought stress | 19.187 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 47.260 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 44.698 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.272 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.265 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 16.399 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 19.897 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 13.927 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 14.031 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 199.315 |
| SRR2868004 | Drought Stress (root) | 95.356 |
| SRR2967015 | Control (root) | 106.180 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 32.865 |
| SRR9715740 | Leaf | 5.589 |
| SRR9715741 | Leaf | 11.340 |
| SRR9715739 | Root | 111.965 |
| SRR9715742 | Root | 30.534 |
| SRR9715743 | Root | 47.361 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 206.082 |
| SRR8749028 | MeJA induced 9h | 89.989 |
| SRR8749029 | MeJA induced 9h | 107.469 |
| SRR8749030 | Uninduced | 2.478 |
| SRR8749031 | Uninduced | 0.092 |
| SRR8749032 | Uninduced | 0.532 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 167.028 |
| SRR8400027 | Control - Root | 133.616 |