Gene detail information of Glyur000269s00013904 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G23930.1 | 5.00E-51 | Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family |
| NR | XP_003517514.2 | 8.43E-107 | PREDICTED: uncharacterized protein LOC100820289 [Glycine max] |
| trEMBL | tr|K7K5B7|K7K5B7_SOYBN | 4.00E-107 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA01G43570.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00269 | 133039 | 133602 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000269s00013904.1 | PF03168.8 | LEA_2 | 72 | 166 | 1.30E-05 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 31.397 |
| SRR1783600 | control | 31.573 |
| SRR1783602 | moderate drought stress | 24.088 |
| SRR1811619 | moderate drought stress | 24.169 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 18.291 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 18.848 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 10.664 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 10.881 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 25.862 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 25.448 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 14.708 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 15.421 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 17.730 |
| SRR2868004 | Drought Stress (root) | 12.330 |
| SRR2967015 | Control (root) | 14.249 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 12.929 |
| SRR9715740 | Leaf | 9.825 |
| SRR9715741 | Leaf | 12.120 |
| SRR9715739 | Root | 24.617 |
| SRR9715742 | Root | 27.959 |
| SRR9715743 | Root | 18.673 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 17.598 |
| SRR8749028 | MeJA induced 9h | 3.109 |
| SRR8749029 | MeJA induced 9h | 3.280 |
| SRR8749030 | Uninduced | 1.106 |
| SRR8749031 | Uninduced | 0.071 |
| SRR8749032 | Uninduced | 1.085 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 20.066 |
| SRR8400027 | Control - Root | 22.182 |