Gene detail

Gene detail information of Glyur000269s00013897.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G08520.1	1.00E-154	ALBINA 1
NR	XP_007158593.1	0	hypothetical protein PHAVU_002G165600g [Phaseolus vulgaris]
COG	YP_007109916.1	0	protoporphyrin IX magnesium-chelatase [Geitlerinema sp. PCC 7407]
Swissprot	tr\|O22437\|CHLD_PEA	0	Magnesium-chelatase subunit ChlD, chloroplastic (Precursor)
trEMBL	tr\|V7CK65\|V7CK65_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW30587.1}

Sequence

Transcript Sequence

>Glyur000269s00013897.1
CTCTAAAATCCAAACAGAGCCACTTCATCAGAAAGGTGGATAAGAAAGGTAGAAGTGAAGTGAGTGAAGGTAGTAGCATCGTGGTGGTTCTCTTCTCTCCTTTGATGATACGAAATGGGTTTCAGTTTGACATACGCAGCTCCAACTTGCTGTAATCTTCAATCGCACACTCTATTTGCCGCATTCAGGTCAAAACCTTATCTCTCTCTGCAACTGCAACTGCAATTGCAATTGCTGCATTATAGAAATCGACCCAAACGCATTCGGAAGGTTCGCGCTCAATCTGAAAATGGAGCTCTTCTAACCGCTGAGAAGCCCTCTGCCACAAATTACGGAAGGCAATACTTCCCCCTCGCTGCCGTTGTAGGCCAAGATGCTATAAAAACTGCTCTTTTACTTGGGGCCATCGACCCTGGGATTGGAGGAATTGCCATATCGGGAAAGCGAGGAACTGCCAAAACAATAATGGCACGTGGATTGCATGAAATACTGCCACCTATTGAGGTAGTTGCGGGTTCCATAGCCAATGCAGATCCATCCTACCCAGAAGAGTGGGAAGATGATCTTACCCAACGCCTGGAATATGATTCTGATGGAAACATCAAAACTCGTATTATCAAGTCTCCCTTTGTTCAGATTCCTCTTGGAGTCACAGAGGACAGACTCATTGGATCAGTTGATGTTGAGGAGTCTGTGAAAACAGGCACAACTGTTTTCCAGCCAGGCCTACTCGCTGAAGCTCATAGAGGTGTTTTATACGTCGATGAAATTAATCTTTTGGATGAGGGTATTAGTAATTTGCTCCTTAATGTATTGACTGAAGGAGTAAATACTGTTGAAAGAGANGGAATCAGCTTCAGGCACCCCTGCAGGCCCCTTCTGATTGCTACCTATAACCCTGATGAGGGTTCTGTTCGTGAACATCTGCTAGATCGCATTGCAATTAATTTGAGTGCAGATCTTCCAATGAGTTTTGAAAACCGCGTTGCAGCTGTTGGAATTGCTACAGAATTTCAGGAATTCAGTAGCCAAGTATTTAAAATGGTTGAAGAGGAAACAGACAATGCAAAAACCCAGATCATCTTGGCTAGAGAGTATCTCAAGGATGTTACTATTAGCAGAGAACAATTAAAATACCTGGTTATTGAGGCTTTACGAGGTGGTTGCCAGGGACATAGAGCTGAGCTATATGCTGCTCGTGTTGCAAAGTGCTTGGCTGCTCTGGAGGGACGTGAAAAGGTTTATGTGGATGACCTAAAAAAAGCTGTAGAATTGGTCATTCTCCCCCGATCAATCATTACCGATAATCCACCTGAGCAACAAAATCAGCCGCCTCCACCTCCGCCACCTCCACAAAACCAAGAATCTGGCGAAGAACAAAATGAAGAGGAAGAACAAGAGGAGGATGACAAGGATGAAGAGAATGAACAACAGCAAGAACAGTTACCTGAAGAATTTATGTTTGATGCTGAAGGGGGCTTGGTGGATGAAAAACTCCTCTTCTTTGCCCAACAAGCACAGAGGCGCCGTGGGAGGGCTGGAAGGGCAAAAAATGTCATATTTTCAGAGGACAGAGGCCGATACATCAAGCCAATGCTTCCGAAGGGCCCTGTAAAGAGATTAGCAGTTGATGCAACCCTTAGAGCTGCTGCACCTTATCAAAAGTTGCGAAGGGCAAAAGACACTGAAAACCGTNGAAAAGTATTTGTTGAGAAAACTGACATGAGGGCAAAGAGAATGGCACGTAAAGCAGGAGCATTGGTGATATTTGTGGTTGATGCAAGTGGAAGCATGGCATTGAACAGGATGCAGAATGCAAAAGGTGCCGCACTTAAGCTTCTGGCAGAAAGCTATACAAGCAGGGATCAGGTATCTATAATTCCATTCCGTGGAGATTCAGCTGAAGTTCTCCTGCCACCATCTAGATCCATTGCAATGGCAAGGAAACGTCTTGAAAGGCTTCCATGTGGTGGAGGGTCCCCCCTTGCACATGGTCTTACCACGGCTGTTAGGGTTGGATTAAATGCGGAGAAAAGTGGTGATGTTGGACGTGTAATGATAGTTGCAATCACAGATGGCCGAGCCAATATATCATTGAAAAGNTCAACTGACCCTGAAGCTGCTGCCGCAACTGATGCCCCTAAACCTACGGCACAAGATTTGAAGGATGAAATTCTTGAGGTGGCTGGGAAGATATATAAAGCAGGAATGTCCCTCCTTGTCATCGACACTGAAAATAAGTTTGTCTCAACGGGTTTCGCCAAGGAGATTGCTAGAGTTGCCCAAGGGAAGTATTATTATTTGCCAAATGCTTCGGATGCTGTTATATCATCGGCCACAAAGGAAGCTTTATCAGCTTTGAAGAGTTCATGAAACCTAATGAGAATTAAGCAACCAAGCTCGACTCCCCCCCCCTTTCTCTCTTTTATTTACATAACGTTAATG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00269	97079	104983	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K03404	chlD, bchD	EC:6.6.1.1	Porphyrin and chlorophyll metabolism	map00860

Gene Ontology

biological_process

GO:0015979 photosynthesis

GO:0015995 chlorophyll biosynthetic process

molecular_function

GO:0005524 ATP binding

GO:0016851 magnesium chelatase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000269s00013897.1	PF01078.16	Mg_chelatase	197	264	5.50E-07
Glyur000269s00013897.1	PF13519.1	VWA_2	550	735	6.80E-18

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	10.478
SRR1783600	control	10.655
SRR1783602	moderate drought stress	12.156
SRR1811619	moderate drought stress	11.873

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	11.834
DRR006520	Root Summer glycyrrhizin high producing strain	11.610
DRR006521	Root Winter glycyrrhizin high producing strain	3.011
DRR006522	Root Winter glycyrrhizin high producing strain	2.952
DRR006523	Root Summer glycyrrhizin low producing strain	8.229
DRR006524	Root Summer glycyrrhizin low producing strain	8.252
DRR006525	Leaf Summer glycyrrhizin high producing strain	74.549
DRR006526	Leaf Summer glycyrrhizin high producing strain	73.985

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	12.764
SRR2868004	Drought Stress (root)	11.943
SRR2967015	Control (root)	14.600

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	45.295
SRR9715740	Leaf	51.299
SRR9715741	Leaf	30.834
SRR9715739	Root	3.924
SRR9715742	Root	10.808
SRR9715743	Root	9.806

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	12.746
SRR8749028	MeJA induced 9h	8.868
SRR8749029	MeJA induced 9h	8.386
SRR8749030	Uninduced	3.150
SRR8749031	Uninduced	1.345
SRR8749032	Uninduced	2.534

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	16.497
SRR8400027	Control - Root	19.089