Gene detail

Gene detail information of Glyur000269s00013893

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G12440.3	1.00E-99	CCCH-type zinc fingerfamily protein with RNA-binding domain
NR	XP_003610956.1	0	Zinc finger CCCH domain-containing protein [Medicago truncatula]
Swissprot	tr\|Q94CJ8\|C3H55_ARATH	8.00E-138	Zinc finger CCCH domain-containing protein 55
trEMBL	tr\|G7K989\|G7K989_MEDTR	0	Zinc finger CCCH domain protein {ECO:0000313\|EMBL:AES93914.1}

Sequence

Transcript Sequence

>Glyur000269s00013893.1
GAGAAATCTACCGCTCTGACCCTCCAAAGATAGGAGAGAGATTACAGAGAGAGAAAACAAGAGAGAGAGAGAGTAAGAGAGTGAGTACTGAGTGAGTGTGTTTTGTTGTTGTTGTTGGTGGTGTTGTTGTTGTTGAGCATATGCAAAACCTACGGCTACTGGTAAGGTATGTGCTGTTGTTAACAGATATATCCACCACCGCCGGCACCACCATTTCTCTTCCTCCATTTCCCCCCTTTCACTCACTCTTCCAAAGTTTTCATTTTTACTTTAATGGGTTCTTATGAAGCTACAAATGTGGTGCTTTCCAAGGTCAAAAACCTCGACCCTGAAAATGCCTCAAAAATCATGGGTTATCTTCTCATGAACCTTGAGGACTCCGAATTAGTACGCTTAGCATGCACCCCTGACCCTGTTCTTCACAACCTCGTTCTGAGGGTGAAGACCCACTTGGGTTTAAGTTCAACAACACACTCATCACTATCAACCCCTTCTTCTCCTTCTCCTCTTAACCCCATAGCAAGACTCACTCCTCCAAACTCTACCAACCCATTTTCAAAGTCTTCTCCAAGAGGGTCCACCAATGGCTTTGACTTCTCTAGAAACCCATCTTCACCTTCCTCCAATGCTTGGCCACCCTCTNGTTTCCAAAAGTTGAGTCCTTTACTCCCTTATGACAACAACATCAACAACATCCAAGCTTCTTCTTCTTCTTCATTCTCACCCCGTGTCAATGGTGATTGTGATTTTGTTGATGAGCACCAACTCAATGAGTACTTCCCTTTCCTCAATGAGCCCTCTAACGGTGAGGATTTTGTCGATCCACGCCTTGAATTGGGTATTGGGGCTCAGAATTGGCACTCTGGCAACAATGGTGACACGCATCTACACAGAAGAAGCTATTCTGCGAGCGATGCGTGTTTTGGTTGTGAGGAAGGTGGTTTTGGAATTGGTTATAAGCCTTGTCTTTACTTTGCAANAGGGTTTTGTAAAAATGGAAGCAATTGCAAGTTTAGTCATGATTCAATTGATGGTGGTGGTGTTGGTTCACCTGGCAAGTTTGAGGGATTGGAACAGCGTGAAGAGTTTATGAGATTCAAGGCAGCTCAACATCAAAGATTTATGCAGATGGTGGGTGGAGGAGCCTCTTCACCATCTTCGTATGACAAGTACATTGATTTTCTGATGCAACAGCACAATGATTCCCAGAGAGCGGCTGCAGCNGCATTCATGATGGGTGATGAATTTTACAACTTTGGCCGGGGTGGCAGGCTGGAAAGGAACGAGTTTCTAGCCATGATTTCTGGGGAAAAGCCCAACAACTCTGCGTCGCGACAGATCTACTTAACGTTCCCTGCCGAAAGCACATTCAAAGATGAAGATGTTTCGGAGTACTTCAGCAAATTCGGACCTGTCCAAGATGTGAGAATTCCTTACCAGCAAAAGCGTATGTTTGGGTTTGTTACCTTTGTCTATCCAGAGACAGTGAGACTCATATTAGCAAAAGGGAATCCTCATTTTATATGTGATTCACGTGTGCTTGTAAAACCCTACAAGGAGAAGGGAAAAATTCCTGACAAGAGACAACAGCATCAACAACAACAATTAGAGAGGGGTGATTTTTCACCGTGTTTAAGTCCNTCTGGGTTTGACTCCAAAGAACCTTACGATTTCCATCTTGGAGCGAGAATGTTATATAATCCGAATGATATCTTATTGAGAAGAAAGCTAGAGGAGCAGGCNGAGTTGCAGCAAGTCCTTGAACTCCAGGAAAGAAGGCTGAAGAATCTGCAACTTCCAGACTTCAAGAATAATCCCATTCACCATCACCAGCGCAGTTTCTCTGTTGGTGCTCCTTTGGCTTTGCCCCGTCAACTTCACAGTCATATTAGCAATCCGGGTCTTTCTTCTGATACCNCTAAAGGAGATGTTACAGGCTACATTGGCATAGGTACTGCATCTGAGCAGCAGCAGCAGCAGCAGCAGCCACAGAAAGGAGTTGAACTGGCTCGCGTTGATGATGCTGAAAGTGGGAATATAAAGGAAAATGCAAAGGCAGAAGTCATAGATCATAGTAATAGAAGTGTGGAGCATGACCTTCCTGATAGCCTCTTTGCTTCTCCAACAAAAGCAGCTGGAGATTATCTGTCTGATTTCTCTCCATTGGAAGAGGTCAATGAGAGTGCTGCTGCATTTTCAGCTACCTCATCTTCTCATAACAAGTCAGAATCAACAACAACCGCTTCCGGTGACATTTATAGAAGCATATAGAAGAAAAAATCTTCTAGATGTATAGCCGAATACACCTAGATCAAGAGACTAGATGCTAGAGAAGAATCAAATGAGGTCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCAATACAACATACTACTAACAGCAAGTGATACATATTTGCATACATGGACAGACATATTAGTTTTATAAGACTAGTTTTCTTTTTCCTCCTTTCCTTTTTTAGTTTTACTCTCAATCCCCCTCCAACACAAGTTATTTGTAGCTGTGTTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00269	63697	68764	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0000166 nucleotide binding

GO:0003676 nucleic acid binding

GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000269s00013893.1	PF00642.19	zf-CCCH	228	250	0.00011
Glyur000269s00013893.1	PF14259.1	RRM_6	365	420	1.10E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	16.886
SRR1783600	control	17.052
SRR1783602	moderate drought stress	13.600
SRR1811619	moderate drought stress	13.548

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	14.742
DRR006520	Root Summer glycyrrhizin high producing strain	14.397
DRR006521	Root Winter glycyrrhizin high producing strain	2.724
DRR006522	Root Winter glycyrrhizin high producing strain	2.685
DRR006523	Root Summer glycyrrhizin low producing strain	7.785
DRR006524	Root Summer glycyrrhizin low producing strain	8.157
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.060
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.152

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	19.175
SRR2868004	Drought Stress (root)	14.370
SRR2967015	Control (root)	17.242

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	8.526
SRR9715740	Leaf	5.888
SRR9715741	Leaf	7.516
SRR9715739	Root	4.047
SRR9715742	Root	14.818
SRR9715743	Root	10.746

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	22.029
SRR8749028	MeJA induced 9h	18.205
SRR8749029	MeJA induced 9h	11.179
SRR8749030	Uninduced	3.851
SRR8749031	Uninduced	1.539
SRR8749032	Uninduced	2.656

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	25.923
SRR8400027	Control - Root	24.545