Gene detail information of Glyur000269s00013891 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| NR | XP_004497542.1 | 5.20E-40 | PREDICTED: exosome complex component RRP45-like isoform X3 [Cicer arietinum] |
| trEMBL | tr|G7IP72|G7IP72_MEDTR | 1.00E-31 | Exosome complex exonuclease RRP41 {ECO:0000313|EMBL:AES64157.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00269 | 54780 | 56641 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.703 |
| SRR1783600 | control | 5.282 |
| SRR1783602 | moderate drought stress | 4.077 |
| SRR1811619 | moderate drought stress | 4.117 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 8.531 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 8.590 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 9.666 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 10.663 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 13.133 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 13.341 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.019 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.601 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 11.577 |
| SRR2868004 | Drought Stress (root) | 8.316 |
| SRR2967015 | Control (root) | 10.087 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.407 |
| SRR9715740 | Leaf | 3.904 |
| SRR9715741 | Leaf | 5.208 |
| SRR9715739 | Root | 1.398 |
| SRR9715742 | Root | 3.537 |
| SRR9715743 | Root | 3.175 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 15.537 |
| SRR8749028 | MeJA induced 9h | 7.314 |
| SRR8749029 | MeJA induced 9h | 12.633 |
| SRR8749030 | Uninduced | 5.581 |
| SRR8749031 | Uninduced | 2.454 |
| SRR8749032 | Uninduced | 4.624 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 5.350 |
| SRR8400027 | Control - Root | 4.825 |