Gene detail

Gene detail information of Glyur000269s00013889.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G10010.1	1.00E-119	Protein kinase superfamily protein
NR	XP_004511499.1	0	PREDICTED: probable serine/threonine-protein kinase At1g09600-like [Cicer arietinum]
COG	YP_001103130.1	4.00E-14	serine/threonine protein kinase [Saccharopolyspora erythraea NRRL 2338]
Swissprot	tr\|F4I114\|Y1960_ARATH	3.00E-118	Probable serine/threonine-protein kinase At1g09600
trEMBL	tr\|G7K985\|G7K985_MEDTR	0	Cyclin-dependent kinase {ECO:0000313\|EMBL:AES93910.1}

Sequence

Transcript Sequence

>Glyur000269s00013889.1
ATGCATCTCCATTCTCTAATTAAATGTTACATGCAACAAATGCTTTGTGGGCTTGAACACTGCCATAGTCGGGGTGTGTTGCATCGTGACATCAAGGGTTCAAATCTTTTGATTGACTGCAATGGAAATCTTAAGATTGGAGATTTTGGACTTGCAACTGTTTATGATCCTGATAAAAAGCAGCCATTGACTAGTCGTGTTGTGACTCTATGGTATAGGGCACCTGAACTTTTGCTAGGTGCTACAGACTATGGAGCTGCAATTGACTTATGGAGTGCTGGTTGCATTCTAGCAGAATTATTGGTTGGGAAGCCTATCATGCCTGGAAGAACAGAGGTAGAACAAATGCACAAGATTTTTAAACTTTGTGGTTCCCCATCTAAAGACTATTGGCAAAGAACAAAATTCCCCCATGCAACAAGTTTTAAACAACAACACTCTTACAAACGCCAAGTCACCGATACATTTAAAAACTTTTCGTCTGCAGCACTAGCTCTTGTTGATAAGCTCCTTTCAATNGAACCAGAAAATCGAGGATCTGCAGCTTCTGCACTTGAGAGTGAGTTCTTCACTACAGATCCCCTACCTTGTGATCCTTCAAGTTTACCTAAGTTTTCGCCAAGCAAGGAGTTTTATGCCAAACATCGAGATAAGGAAGCACTAAGGAAAAATACTGAAGCTATTAAAGGACGTGGGCCAGTATCAGTTTTACGGGGAGCAAGAGATACCAAAGTACTGGAAACACCAGAGTATAATGCTCGGGGAGATATATCTTTGCGGGGCGAGCCAAATGCTAAAATGCCCCGTCTTAAATGTGAATCCCAGGAGGAGGATGGATCTCACAAGTGTGATCTAAGTATAGTTTCTCTACAGAATGGCTATGTACATTCTACTTCAATGATGCACGGTAGTACAGTAGGACCATCCTCGTTGTGTAAGAAATCAGAATCATCTAAGAAGAATCCTGAGTTACGGACACAAAGATCGCAGTTGAATCAGGCAACCACAGACTTATCCAACTTTTCTATTAAAAAGGAAACAGGCATGTCAGGACGAGAACCCGGGATGGGGTATATACCCAAGAAAAATAGGATTCATTGTTCTGGACCATTGATGCCTCCTGGTGGCAACATTGATGACATGCTCAGAGAGCATGAGCGGTTAATGCAAGATGTTTTCCGCAGTGTCAAGAAGACTAATCNGGAAAAATGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00269	42728	48025	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:4.5.2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000269s00013889.1	PF00069.20	Pkinase	6	190	2.00E-44

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.060
SRR1783600	control	0.061
SRR1783602	moderate drought stress	0.111
SRR1811619	moderate drought stress	0.125

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.090
DRR006524	Root Summer glycyrrhizin low producing strain	0.090
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.153
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.152

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.339
SRR2868004	Drought Stress (root)	1.360
SRR2967015	Control (root)	0.827

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.398
SRR9715740	Leaf	0.924
SRR9715741	Leaf	1.307
SRR9715739	Root	0.000
SRR9715742	Root	0.000
SRR9715743	Root	0.000

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.235
SRR8749028	MeJA induced 9h	0.787
SRR8749029	MeJA induced 9h	0.544
SRR8749030	Uninduced	1.835
SRR8749031	Uninduced	0.711
SRR8749032	Uninduced	0.683

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.395
SRR8400027	Control - Root	0.172