Gene detail

Gene detail information of Glyur000269s00013887

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G20560.1	3.00E-149	acyl activating enzyme 1
NR	XP_003610946.1	0	2-succinylbenzoate-CoA ligase [Medicago truncatula]
COG	YP_002890504.1	2.00E-123	acyl-CoA synthetase [Thauera sp. MZ1T]
Swissprot	tr\|F4HUK6\|AAE1_ARATH	0	Probable acyl-activating enzyme 1, peroxisomal
trEMBL	tr\|G7K979\|G7K979_MEDTR	0	Long-chain acyl-CoA synthetase {ECO:0000313\|EMBL:AES93904.1}

Sequence

Transcript Sequence

>Glyur000269s00013887.1
ATCCCATATTTGTGTTTATCTCCAGGCACAGGCAGAGGCATAGAGAGTTGGGAGATGATGATGGAGGGTAGTATCCGGTGCTCCGCAAACTATGTCCCTCTCACTCCCATCACCTTCTTGGAGCGCTCCGCCGTTGTTTACCCCGACAAACCCTCTCTCCTCTTCGGTGACGTCACCTACACTTGGTCTCACACTCACCAACGCTGCCTCAAGCTCGCTTCTTCCATTTCCCACCTCGGTGTCTCTCCCGGTGACGTGTTGGTTGGAGCTTGGAATGGAATTATAATTTGGTCTGCTAAGCCAGTGTCTGTTGATGATTATTTTGTGCTTGCCAAAATCCTCTTTGTAGACTATCAATTACTTGATATTGCTCGAGGAGCACTTGAAATCCTGTCAAAATCAACTGCCAAGATTCCCCTATTGGTCTTAATTTTGGAGTGTGATGCTCGGCCATCACAACCACCTCATCACACTCCTGGAGGAACATTGATCTACGAGAATCTCATAGCTGAAGGGAGCCTTGACTTCGAGGTGAGAAGGCCAAAGGATGAGTGTGATCCTATCTCACTCAATTACACTTCTGGAACCACATCAAGTCCCAAGGGTGTAATATATAGCCATAGAGGTGCATATCTCAATTCCCTGGCCGCGGTTCTTCTCAGCGAGATGAGGTCTATGCCAGTGTATCTATGGTGTGTTCCCATGTTTCATTGCAATGGATGGTGCCTCCCTTGGAGTATTGCTGCTCAGGGTGGCACAAATGTCTGCCAGAGAAATGTAACTGCTAAAGGGATATTTGACAGCATTTCTAAGCACAAGGTAACCCACATGGGGGCCGCTTCCAGGGAAGGTGTCGGTGATGGTAGGCGCTGCCCCACTGCCGCCGGAATCCCGGATGTGTTTTTTCGGATGGAAGAACTAGGATTCACTGTGACTCATTCATATGGTTTGACAGAAACTTATGGTCCAGGATCAATTTGCACATGGAAACCAGAATGGGGAGTACAACATCTTGGAATGGAAGAGCTCGATGTAAAAGATCCTGTCACGATGAAGAGTGTGCCTGCTGATGCAAAAACCATGGGGGAGGTTATGTTCAGGGGAAACACTGTGATGAATGGATACCTAAAGGATTCGAAGGCAACACAGGAAGCATTCAAAGAACTTAAGGATAGATCAAAGGACATTATCATCTCTGGGGGTGAAAACATTAGCACCATTGAGTTGGAAGGTGTGATTTTTAGCCATCCAGCAGTTCTTGAGGCAGCTGTTGTGGGGAGACCTGATGAGTATTGGGGAGAGACACCTTGTGCATTTGTGAAGCTCAAGGAAGGGTGCAGCAAGACACAGAAATTTGTTTTGAGGGAGAAGGCTAAGGCTATGGGAAGCTTGTCTAAGAACACTAGCCGGTTGTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00269	34928	37079	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0008152 metabolic process

molecular_function
GO:0003824 catalytic activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000269s00013887.1	PF00501.23	AMP-binding	23	71	0.00011
Glyur000269s00013887.1	PF00501.23	AMP-binding	156	262	5.00E-17
Glyur000269s00013887.1	PF00501.23	AMP-binding	285	370	7.80E-11
Glyur000269s00013887.1	PF13193.1	AMP-binding_C	390	431	1.80E-09

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	12.858
SRR1783600	control	13.393
SRR1783602	moderate drought stress	24.816
SRR1811619	moderate drought stress	24.101

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	14.216
DRR006520	Root Summer glycyrrhizin high producing strain	13.583
DRR006521	Root Winter glycyrrhizin high producing strain	52.446
DRR006522	Root Winter glycyrrhizin high producing strain	47.691
DRR006523	Root Summer glycyrrhizin low producing strain	15.628
DRR006524	Root Summer glycyrrhizin low producing strain	14.855
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.946
DRR006526	Leaf Summer glycyrrhizin high producing strain	8.160

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	23.113
SRR2868004	Drought Stress (root)	36.776
SRR2967015	Control (root)	44.692

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	8.479
SRR9715740	Leaf	11.075
SRR9715741	Leaf	12.548
SRR9715739	Root	10.478
SRR9715742	Root	11.320
SRR9715743	Root	10.100

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	12.974
SRR8749028	MeJA induced 9h	31.160
SRR8749029	MeJA induced 9h	43.590
SRR8749030	Uninduced	22.365
SRR8749031	Uninduced	29.739
SRR8749032	Uninduced	59.878

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	15.560
SRR8400027	Control - Root	14.349