Gene detail

Gene detail information of Glyur000269s00013884

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G10020.1	5.00E-138	hydroxysteroid dehydrogenase 5
NR	XP_003610951.1	0	Hydroxysteroid 11-beta-dehydrogenase 1-like protein [Medicago truncatula]
COG	YP_002763101.1	3.00E-34	putative oxidoreductase [Gemmatimonas aurantiaca T-27]
Swissprot	tr\|Q9T0G0\|HSD5_ARATH	1.00E-175	11-beta-hydroxysteroid dehydrogenase-like 5
trEMBL	tr\|G7K984\|G7K984_MEDTR	0	Corticosteroid 11-beta-dehydrogenase {ECO:0000313\|EMBL:AES93909.1}

Sequence

Transcript Sequence

>Glyur000269s00013884.1
ATGGACTTTCTGAATTTTTTGCTTAATTTGTTTGTCCCTCCAGTCAGTTTGATCACCTTGGCTTTCTCATGGCCAGCACTTTGTTTCCTCAATGCTTGTGAGTGGNTCTATAACAGTATATATGGTGAGGATATGGATAGTAAAGTGGTCATAATCACCGGTGCATCTTCTGGCATTGGAGAGGCAACATATGAGTATGCAATAAGGAGAGCAAATTTAATGTTGGTGGCACGAAGAGAGCACAGGCTAAGAGGGATCGCAGAGAATGCAAGGAGAATGGGTGCAAGGCATGTGATGATTATGGCAGCAGATGTTGTGAAGGAAGATGACTGTAGGAGATTTGTCAATGAAACCATTAATGTCTTCGGTCGTGTGGATCACCTTGTAAATACAGTGAGTTTGGGACATACATTCTACTTTGAAGAAGTCACAGACACCTCTGTTTTCCCTGTTTTATTGGATATTAATTTTTGGGGGAATGTTTATCCAACATTGGTGGCTCTTCCTTACCTTCACCAAAGCAATGGTCGTGTAATTATCAATGCATCGGTTGAAAGTTGGTTACCTTTGCCAAGGATGAGTTTGTATGGCGCTGCAAAGGCAGCATTAGTGAACTTCTACGAGACGCTGAGGTTTGAATTGAAAGACGAGGTTGGAGTAACGATAGCAACACATGGTTGGATTGGAAGTGAAATGACGAGGGGGAAGTTCATGCTAGAGGAGGGTGCGGAGATGCAGTGGAAGGAAGAAAGAGAAGTGCACGTGACTGGGGGACCAGTAGAGGAGTTTGCGAGGTTGATAGTGAGTGGGGCATGTAGAGGGGATGCGTATGTGAAGTATCCAAGCTGGTATGATGTGTTCCTGCTATACAGGGTGTTTGCTCCCAATGTTCTCAATTGGGCATTCCGGCTGCTTATTTCACCCCANGGCACCAGAAGAACTTCTTCTTATGTTGGGACTGGAAAATCCCTTGACACTACTGTGGGGAGACCCATGTTGGAGGGAACCTCTCCTACAATGGTCCCACTTACCTTCTCTGGCCAGATGATGCAGCAAAAGATGGATTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00269	30042	32541	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0008152 metabolic process

molecular_function
GO:0016491 oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000269s00013884.1	PF00106.20	adh_short	48	214	1.50E-20

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.738
SRR1783600	control	0.656
SRR1783602	moderate drought stress	1.090
SRR1811619	moderate drought stress	1.028

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.499
DRR006520	Root Summer glycyrrhizin high producing strain	0.493
DRR006521	Root Winter glycyrrhizin high producing strain	2.593
DRR006522	Root Winter glycyrrhizin high producing strain	2.718
DRR006523	Root Summer glycyrrhizin low producing strain	0.201
DRR006524	Root Summer glycyrrhizin low producing strain	0.311
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.420
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.422

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.417
SRR2868004	Drought Stress (root)	1.948
SRR2967015	Control (root)	1.724

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.617
SRR9715740	Leaf	0.463
SRR9715741	Leaf	1.065
SRR9715739	Root	0.000
SRR9715742	Root	0.564
SRR9715743	Root	0.723

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.299
SRR8749028	MeJA induced 9h	0.420
SRR8749029	MeJA induced 9h	0.056
SRR8749030	Uninduced	0.334
SRR8749031	Uninduced	0.429
SRR8749032	Uninduced	0.435

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	9.204
SRR8400027	Control - Root	7.970