Gene detail

Gene detail information of Glyur000269s00013882

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT1G20560.1	acyl activating enzyme 1
NR	XP_004511496.1	PREDICTED: probable acyl-activating enzyme 1, peroxisomal-like isoform X1 [Cicer arietinum]
COG	YP_421864.1	Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II [Magnetospirillum magneticum AMB-1]
Swissprot	tr\|F4HUK6\|AAE1_ARATH	Probable acyl-activating enzyme 1, peroxisomal
trEMBL	tr\|G7K979\|G7K979_MEDTR	Long-chain acyl-CoA synthetase {ECO:0000313\|EMBL:AES93904.1}

Sequence

Transcript Sequence

>Glyur000269s00013882.1
GCAGAGGCAATGATGGAGGGTAGTATCCGGTGCCCCGCAAACTATGTCCCTCTCACTCCCATCACCTTCTTGGAGCGCTCCGCCGTTGTTTACCCCGACAAACCCTCTCTCCTCTTCGGTGACGTCACCTACACTTGGTCTCACACTCACCAACGCTGCCTCAAGCTCGCTTCTTCCATTTCCCACCTCGGTGTCTCTCCCGGTGATGTGGTTGCTGTGCTGGCCCCTAATATTCCAGCCATGTATGAGCTACATTTTGGTGTTCCAATTTCAGGGGCTGTTCTCTGCACACTCAATACCCGTCACGGTTCATCAATGGTTTCATTGTTGTTAAAACATTCTGAGGCCAAAATCCTCTTTGTAGACTATCAATTGCTTGATATTGCTCGAGGAGCACTTGAAATCCTGTCAAAATCAACTGCCAAGATTCCCCTTTTGGTCTTAATTTTGGAGTGTGATGCTCGGCCATCACAACCACCTCATCACACTCCGGGAGGAACTTTGATCTATGAGAATCTCATAGCTGAAGGGAACCTTGACTTCGAGGTGAAAAGGCCAAAGGATGAGTGTGATCCAATCTCACTCAATTACACTTCTGGAACCACATCAAGTCCCAAGGGTGTAATATATAGCCATAGAGGTGCATATCTCAATTCCCTGGCCGCGGTTCTTCTCAGCGAGATGAGGTCTATGCCAGTGTATCTATGGTGTGTTCCCATGTTTCATTGCAATGGATGGTGCCTCCCTTGGAGTATTGCTGCTCAGGGTGGCACAAATGTCTGCCAGAGAAATGTAACTGCTAAAGGGATATTTGACAGCATTTCTAAGCACAAGGTAACCCACATGGGGGGTGCACCAACGATTCTGAACATGATCATAAATTCACCACCTGAAATCCGGAAGCCGCTTCCAGGGAAGGTGCGCTGCCCCACTGCCGCCGGAATCCCGGATGTGTTTTTTCGGATGGAAGAACTAGGATTCACTGTGACTCATTCATATGGTTTGACAGAAACTTATGGTCCAGGATCAATTTGCACATGGAAACCAGAATGGGGTAGCNTGCCTCCTGAAGCACGGGCGAAAATCATGGCNCGTCAAGGAGTACAACATCTTGGAATGGAAGAGCTCGATGTAAAAGATCCTGTCACGATGAAGAGTGTGCCTGCTGATGCAAAAACCATGGGGGAGGTTATGTTCAGGGGAAACACTGTGATGAATGGATACCTAAAGGATTCGAAGGCAACACAGGAAGCATTCAAAGGTGGATGGTTTAGGACNGGTGACTTGGGGGTAAAGCATGGTGATGGTTACATAGAACTTAAGGATAGATCAAAGGACATTATCATCTCTGGGGGTGAAAACATTAGCACCATTGAGTTGGAAGGTGTGATTTTTAGCCATCCAGCAGTTCTTGAGGCAGCTGTTGTGGGGAGACCTGATGAGTATTGGGGAGAGACACCTTGTGCATTTGTGAAGCTCAAGGAAGGGTGCAGTGCTACTGCAGAGGAGATCATACAGTTNTGTCGGAAGCGCTTGCCGCACTATATGGCTCCTCGGACTGTGGTGTTTGCTGATCTGCCAAAGACATCAACAGGCAAGACACAGAAATTTGTTTTGAGGGAGAAGGCTAAGGCTATGGGAAGCTTGTCTAAGAACACTAGC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00269	175	2239	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0008152 metabolic process

molecular_function
GO:0003824 catalytic activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000269s00013882.1	PF00501.23	AMP-binding	25	450	3.70E-73
Glyur000269s00013882.1	PF13193.1	AMP-binding_C	459	533	1.50E-21

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.645
SRR1783600	control	5.822
SRR1783602	moderate drought stress	10.989
SRR1811619	moderate drought stress	11.389

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	11.992
DRR006520	Root Summer glycyrrhizin high producing strain	11.856
DRR006521	Root Winter glycyrrhizin high producing strain	59.954
DRR006522	Root Winter glycyrrhizin high producing strain	57.802
DRR006523	Root Summer glycyrrhizin low producing strain	14.311
DRR006524	Root Summer glycyrrhizin low producing strain	15.293
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.273
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.295

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	19.215
SRR2868004	Drought Stress (root)	27.490
SRR2967015	Control (root)	33.205

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	6.079
SRR9715740	Leaf	6.872
SRR9715741	Leaf	7.660
SRR9715739	Root	6.077
SRR9715742	Root	5.236
SRR9715743	Root	5.059

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	16.358
SRR8749028	MeJA induced 9h	33.719
SRR8749029	MeJA induced 9h	59.657
SRR8749030	Uninduced	30.059
SRR8749031	Uninduced	41.632
SRR8749032	Uninduced	81.989

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	9.052
SRR8400027	Control - Root	8.939