Gene detail information of Glyur000268s00013376.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G41380.1 | 1.00E-24 | CCT motif family protein |
| NR | XP_007132138.1 | 6.47E-108 | hypothetical protein PHAVU_011G069800g [Phaseolus vulgaris] |
| Swissprot | tr|Q940T9|COL4_ARATH | 1.00E-10 | Zinc finger protein CONSTANS-LIKE 4 |
| trEMBL | tr|V7AEY1|V7AEY1_PHAVU | 2.00E-108 | Uncharacterized protein {ECO:0000313|EMBL:ESW04132.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00268 | 117762 | 119506 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | Orphans |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000268s00013376.1 | PF06203.9 | CCT | 190 | 231 | 6.70E-18 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.683 |
| SRR1783600 | control | 0.746 |
| SRR1783602 | moderate drought stress | 0.384 |
| SRR1811619 | moderate drought stress | 0.392 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.966 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.964 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.548 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.501 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.401 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.564 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.790 |
| SRR2868004 | Drought Stress (root) | 1.134 |
| SRR2967015 | Control (root) | 0.371 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.062 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 3.945 |
| SRR9715743 | Root | 2.479 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.106 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.174 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 4.551 |
| SRR8400027 | Control - Root | 3.787 |