Gene detail

Gene detail information of Glyur000268s00013364

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G45780.2	0	phototropin 1
NR	XP_004505926.1	0	PREDICTED: phototropin-1-like isoform X1 [Cicer arietinum]
COG	NP_419104.2	3.00E-32	sensory box histidine kinase [Caulobacter crescentus CB15]
Swissprot	tr\|O48963\|PHOT1_ARATH	0	Phototropin-1
trEMBL	tr\|Q5DW44\|Q5DW44_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW04141.1}

Sequence

Transcript Sequence

>Glyur000268s00013364.1
TTGATATTTTGAAGCAATAAGAGAGGACTTATCCAAGGTATCCTTGATCCTTCACATCAAGAAATTGAAATCAAAGCAGTCATTTTAGCACACAGTAGGCAACTACATCAAAGGGGGAAAACATCAATCACCATTTATTCATGGGAAAAATTATACAATTAACTGATCAATCTTGAGGATTATTATTTGTGGTCCTCTGTAGTGCAGCATCTACCAACATGGTCTCGTGTGTCCACTTCTGATCAAGCCTATCAATGGGACCATTAATCCTTTCAGCAAGCTCCTGTTTTCCTTAGTTAAAGGCATACTCTTGTGCATGATATTGGGTATATTAATATTCTAGTTTTCTCCACAACCAAAAGGGAGAGTAGATATTTTTTTTNCTTGCCATTTATGGTTGTCTGGTTTTGCTTTTGTCCTATAAGTCCCCCATCTTAGACATAGAAACACAACTAGTGTTNGTGTTATTCTGGGAACAACAGGAGGGTACAGCCTGAGAAGACATACAGTTGTACACGTTCTCTGCTTTTCTTGCCTGACAACCCTTTTTCCAGACTGTCAATTACTGACACCAGAAATCATTGAGGAGAGTGAGAGGGATGGAGGCATTTCAAAGAGACCCTCGTGGCTCGCTCGAAGTGTTCAACCCTTCCTCTTCTTCCTCCACTGAGAAGCCAATCAATTCGCCGTTGCGCTCCCAACCGGCATGGAAGACTTTGATAGACCCGCGCGCCGCCAAAAACCCACCACGCGCTTCCAGTTCCGATGAAGCTGCCGCCGCCGCCCCGTGGATGGCGCTCAAGGACCCCGGTATTCCTCCGTCGGCCGGGGAACTGGGGTCGGCGGCGGCGCAGAGGGCGGCGGAGTGGGGGTTGGTGCTGAAAACGGACACGGAGACGGGGAAGCCGCAGGGAGTGGGGGTTCGGGACTCCGGCGGGTCGAGGAGGGACTCGAACAACTCGGTGAGGAGTTCCGGCGAGTCTTCGGAGGAGGGGAGGGAGTACCGGGGAATACCGAGGGTTTCGGAGGACTTGAGGGACGCTCTGTCCACGTTTCAACAGACATTCGTGGTTTCGGATGCTACCAAACCCGATTACCCGATCATGTATGCCAGTGCCGGGTTCTTTCGGATGACCGGTTACTCATCCAAGGAGGTCATCGGGAGGAACTGTCGGTTTTTACAGGGAGCAGAAACGGATCCGGATGACGTGGCAAAGATAAGGGAAGCGCTGCAATCAGGAACGTCTTATTGTGGAAGGTTGCTGAATTACAAGAAGGATGGGACCCCCTTTTGGAACCTTCTCACTATCGCTCCCATCAAGGACGACCAAGGCAAGGTCCTCAAATTTATCGGAATGCAAGTGGAGGTTAGCAAGCATACAGAGGGGTCCAAGGAGAATATGCTACGCCCCAATGGATTGCCCGAATCCTTGATTCGATATGATGCTCGTGAGAAGGAGAAGGCAAGCTCTTCAGTGAGTGAGTTGGTGCAGGCTGTGAGGCGGCCACGGGCACTGAGTGAGTCAACAGGCCGTCCCTTCATCAAAAAGTCAACAACACATGCAGAACAGAAACCATCACCAGCAGTCATGAAGTCATCAAGGAGAAAATCGGAGAGNACCGTGGCTTCATTTAGACGCAAGTCACATGCAGCAGACTCAACAAACTCAATGCTTCCAATCGCTGAACTCCCCCAAAGGAAAAACAATCCCTCACGTCGCCGCCGTTCTTTCATGGGTCAGTCCAACTATGGAAGCTTCCATGATGAAGCAGTTAATGTTGAGGATAGCTCTGAGGCCAGTGAGGATGATGAGGGGGCTGATAGTTTTGATGACATAAGTACAGTACAAGATAAGAGGGAAAAGCGAAAGGGTCTTGATCTTGCTACCACACTTGAACGTATTGAGAAGAACTTTGTCATTACTGATCCCAGGCTGCCTGATAACCCCATTATCTTTGCATCTGATAGCTTCTTAGAGCTCACAGAGTATAGCCGTGAAGAAATCTTGGGAAGAAATTGCAGGTTTCTGCAAGGACCTGAAACTGATCCAGCAACTGTGAAAAAAATTAGAGACGCTATTGACCATCAAACAGAAGTTACCGTNCAGCTCATCAATTATACAAAGAGTGGTAAAAAGTTCTGGAACCTGTTTCATTTGCAGCCAATGCGTGATCACAAGGGAGAGGTACAGTATTTCATTGGTGTTCAGCTTGATGGTAGTCAACATGTGGAGCCTCTTCACAACCGCATTGCAGAAGATACAGCAAAGGAGGGAGAACAAGTGGTAAAACAAACTGCAGGAAATGTTGATGATGCATTGAGAGAACTCCCAGATGCTAATTTGACACCAGAAGATCTATGGATAAATCATTCAAAAGTGGTTCACCCCAAACCTCATAGGAAGGATGAAGCTGCTTGGAGAGCTATTCAAAAGATCCTGGATAGTGGAGAGCAGATAGGCTTGAAGCATTTTAGGCCAATTAAACCTTTGGGATCAGGAGATACTGGCAGTGTCCATCTGGTGGAGCTATGTGGAACTGGTCAATATTTTGCCATGAAGGCTATGGAGAAGGGTGTTATGCTCAATCGTAACAAGGTGCACAGAGCTTGCACAGAGAGAGAAATCCTAGACATGTTGGACCACCCTTTTCTTCCTGCACTATATGCTTCCTTTCAGACCAAAACACATGTTTGTTTGATAACTGATTACTGTCCCGGAGGAGAACTATTCCTGCTTCTTGACCGCCAGCCGGCAAAGGTTCTCAAGGAAGATGCAGTGAGATTTTATGCCGCTGAAGTAGTTGTAGCATTGGAGTACCTTCATTGTCAAGGGATAATATATAGGGATTTGAAGCCAGAAAATGTGTTACTCCAGAGAAGTGGACATGTGTCTCTAACAGATTTTGATTTGTCATGTTTAACATCTTGCAAACCACAGCTTTTAATTCCAGCAATGAATGAAAAGAAGAAGCAACACAAAGGNCAACAGACTCCAATATTTATGGCTGAACCTATGAGAGCATCAAACTCTTTTGTTGGCACAGAAGAGTACATAGCTCCGGAAATTATAACGGGTTCAGGCCATAGCAGTGCTGTGGATTGGTGGGCTCTTGGAATTCTTCTATATGAAATGTTTTATGGGTATACACCATTCAGGGGAAAGAGCAGGCAAAGAACATTTACAAATATTCTCCACAAGGATCTTAAATTTCCCAAAACTAAACAGGTAAGTCTGAGTGCAAAGCAGTTAATGTACCGGTTGTTGCAGAGAGAGGTGAATAGCAGGTTGGGTTCAAAGGGAGGAGCCAATGAAATTAAACACCATCCCTTCTTCCGTGGTGTCAATTGGGCCCTTGTTCGTTGCACGAAACCTCCTGAGCTTGATGCTCCTCTCTTCGAGACAACTCAAGAAGAAAAGGAAGCCAAATATGTAAATCCTGAACAAGAGGATTTGAGTGTCTTCTGAATTAAGGTTAAAGGGAGTTAGCTATATCTCATCTAATTCACCGATACACGATGATGAGTTATTTGGGTTCTTGAGGAACTAATTAATGGAATTTTAATTAAACTCTTGCTAGCTTTGGTGGTGGACAAGGNCTGAGGCTAAGCCCAGTTAAGCAAATCAAGGCTTGGATTATGTAACATGTTTCCTTGTAATTTATGAACGGTGTGATATTTCTAATATGCCAATTGCCAAGTCATGATGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00268	52378	64385	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:4.2.6

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0000160 phosphorelay signal transduction system

GO:0006468 protein phosphorylation

GO:0007165 signal transduction

molecular_function

GO:0000155 phosphorelay sensor kinase activity

GO:0004672 protein kinase activity

GO:0004871 signal transducer activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000268s00013364.1	PF13426.1	PAS_9	162	258	5.10E-21
Glyur000268s00013364.1	PF13426.1	PAS_9	439	539	2.00E-24
Glyur000268s00013364.1	PF00069.20	Pkinase	628	912	4.30E-62

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.389
SRR1783600	control	0.363
SRR1783602	moderate drought stress	0.572
SRR1811619	moderate drought stress	0.603

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.212
DRR006520	Root Summer glycyrrhizin high producing strain	3.187
DRR006521	Root Winter glycyrrhizin high producing strain	1.609
DRR006522	Root Winter glycyrrhizin high producing strain	1.586
DRR006523	Root Summer glycyrrhizin low producing strain	0.413
DRR006524	Root Summer glycyrrhizin low producing strain	0.417
DRR006525	Leaf Summer glycyrrhizin high producing strain	36.161
DRR006526	Leaf Summer glycyrrhizin high producing strain	35.680

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.204
SRR2868004	Drought Stress (root)	2.740
SRR2967015	Control (root)	1.878

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	28.153
SRR9715740	Leaf	21.852
SRR9715741	Leaf	41.353
SRR9715739	Root	0.108
SRR9715742	Root	0.672
SRR9715743	Root	0.512

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.295
SRR8749028	MeJA induced 9h	0.158
SRR8749029	MeJA induced 9h	0.129
SRR8749030	Uninduced	0.132
SRR8749031	Uninduced	0.221
SRR8749032	Uninduced	0.442

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.236
SRR8400027	Control - Root	2.100