Gene detail

Gene detail information of Glyur000267s00016690

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G13370.1	2.00E-166	Plant protein of unknown function (DUF936)
NR	XP_004508565.1	0	PREDICTED: uncharacterized protein LOC101503442 [Cicer arietinum]
COG	YP_007175814.1	3.00E-23	methyltransferase [Natronobacterium gregoryi SP2]
Swissprot	tr\|Q9M088\|E135_ARATH	4.00E-136	Glucan endo-1,3-beta-glucosidase 5 (Precursor)
trEMBL	tr\|I1MUF4\|I1MUF4_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA17G12970.1}

Sequence

Transcript Sequence

>Glyur000267s00016690.1
GGGCCAGCCACAGCGAACAAGTAGTAACAACGCTAAACCCTCACGCAGCATCAGTGGGCGCGGTTGCAGAATGTCTGAATGGTGATGTTGGAGTGGTAGTTCCAGGGCAGGAAGTAGGGTTCTTCTCTTCAAGCATCGCGCAATGTTGTTGGACGAGAGCAAGTTCGACGTGCACTTTAAATTGTGGGCCCTTCGAATACCTTGCCAACTCTGTAAGGTCGCCACCAGAATCCTCAATGGTTACTTGCTGGACAAGCCCCGAGTGAAACCCATCACCGAGGACCCAACCTGTGACAAAAACCGTTACCTCATACTCTCCGAGAAAGTTCAGAATCAAGATTTATCCGATATTCCAAAGCAAAAGCTTGATGAGCTTAAGGACTTGTGTGGGATTGAAGTTTTGCCCTATTCCTTGACACTGGGTTATTCATACTGGAGTGCAGGTCAAATTGCCCATTTAAACCTACANGATGAATTGCTTCCCTTCAAAGATGTTATTGCGAAGAAAAATTATCCAAGAATCAANACTGTTGTTAATAAAGTTGGAACCATCACAAATGAATTTCGTGTTCCAGCTTTCGAAATTTTAGCAGGAGAGCATGATATGATTACAGAAGTGAAGCAATATGATTGGAACATGAACACAAAAGTTGATACAAAAGACCTAGGAGACTGTAATAACTCTAGTTTAGAGGATATACAAGGTTCGGCAGGGCATGCTGCTAAATCTGTAATTGCTGGGAATGGAAAGGCTCATGGCACTGGCATCCTTGAAGGTGGTGGGAAAAAAGGAAGCACAAACAAGAGAAAGAGAGGGTCTGAAATCTCTGTCGCAAGAACTTGGGAACATATTGACCACGTAATAATGAACCTACCAGCATCTGCTGTTCAGTTTCTAGATGCATTCAGGGGATTGATCCAGAGGAAATATTGGAAAGGACATCTACCNTGGATCCACTGCTATTGCTTCATTAGGGCAACTGAAACTCCTGAATCTATAATAGCTGAGGCAGAATCTGCTTTAAATGCTTCTATACTAGACTCAAGATTTCATAGGGTTAGGGATGTAGCTCCAAACAAGGTAGATACATACCTGAATATAGCAAAAAGCAATAAAATGGCACAAGAAAAGGGAATCCATGTTTGGTACACAATGGCATTCTTCCTTGTATGCTTAAGCATGGCCTCGTGTGTCTCAGGGGTTGGAGTGAACTGGGGAACCATGGCAACTCACCAGCTTCCACCAGAGAAGGTGGTTAAGATGCTTCAAGAAAATGGTTTTGATAAACTGAAGCTGTTTGATGCGGATGAGTGGATTATGGCAGCTCTTTTGGGGACTGATATAGAGGTGATGCTGGCAATACCCAATAGCATGTTGGAGGANATAAGTAAGGATCCTGAGGCTGCAGAATCTTGGGTTTATGAAAATGTCACCAGTTACTTGTACCCTGGTGGACTAAATATCAAGTACATTGCCGTTGGTAATGAACCTTTCCTTAAGGAATATAATGGCACCTATCTACAGTCCACTCTTCCAGCTCTTAAGAATATACAAGCATCTCTCAATAGTGCTGGCGTTGGTTCAAAGATCAANGCCACTGTTCCCTTCAATGCAGATGTTTACTATTCCCCAGACACCAACAACCAAGTGCCATCAGCTGGTGACTTCAGGCCTGAAGTAAGAGACCTGACAATTGAAATAATCAATTTCTTATACTCAAACAATGCACCTTTCACTGTCAACATCTATCCATTCCTCAGCCTCTATGGAAATGATCATTTCCCCTTTGACTTNGCATTCTTTGATGGAAGCAACAAGCCTCTTGTGGATGGAAATTCTCTTTACACTAATGTGTTTGATGCAAACCTTGATACCCTTCTCTGGGCTCTAGAGAAAGCAGGATACCCAGATATGCATGTCATAGTTGGAGAAGTTGGGTGGCCAACTGATGGTGATTGGAATGCCAATGTGGTTAATGCAAAAAGGTTCAACATGGGTTTGCTTAAGCATGCTTTGAGTGGGAATGGTACACCTAAGAGGAAAGGCATAATTGACATTTATCTATTCAGCTTGATTGATGAGAATGNCAAAAGCATTGCTCCTGGCAACTTTGAGAGGCACTGGGGTATCTTTGAGTTTGATGGGAAGCCAAAATATGAATTGGACTTAAGGGGTCTTGAAGAGGATAAGGGGCTTGTCCCTGTGGAGGGTGTGAAGTACATGGAAAAACAGTGGTGTGTGTTGGATTCTGATGCTGCTAAAGACTTGCGCTACTTGTTGGCTGAGAGTGTGAATAACCAGAGGGATTGGGACTGTGATTTCTCTGGCTTGGCCATCTTAACAGATGAGGATCCATCAGAAAAGGGGTGCCAGTTCCCTGTCATGATCTCTGATGCTTCTTCCTCTTTGCTAAAGAAAGCTTTCAGTGCGATGAACTCGGACACCCGGGTGACCGGAGACCACCGGTCACCTCTCCTGCAGGTGATAGGCATCGTCCCCGCCCTGGCAGGTTCCGACCTGTTCTCGAANCAGCAAGGGTTCTACCTGAACCTCTCCGATTCCCTGAACTCCACCTACGTACTCCTCCCCCACCCAGACTCCGACCTCATCCTCTCCAACCGCCTCCACCTCGGCCAGTTTGTCCACGTCGACCGCTTCNACTTCCATTCCCCTCTCCCCACCGTCTCCTCCCTCCGCCCCCTCCCCGGCCGCCACCCCTTCCAAGGCACCCCCGAACCCCTTGTCGCCCGCATCTCCCCTTCCTCCCGCCACTTCCTCATTCAACCCCTCTCCGATTCCGCACAAGACCCTCTCTCTCTCTACCTCTCCACCACCAACACCAACACTAACACTACCAACAACACAAACACCAACACCTCCGAACAACAACAACAACAACAACAACCGACGCAAAACAATTCAAGGCAACCACTTGCGCCGAGAGACAATTTGCCCCCGCCGCAGAGATTCTCCTCTCCGGCAGCCGCCAAGAGGTCTCACTCCGCCGGGAGGAATAAGAATGTTTCCGCCGCCGAGAGGGATCCTTCCCCTGCCGGAAAGGGGAAGAGGTCGGCGTCGCCGGTGCCGTCGAAATGCGTGGTTCCCAGCCTTGTCTCGGCTCGCGAGGAGAGCCGGAAGGTGAACAGGGAACCGGCGATCATTGTTCCGTCGAGGTACCGGCAGCCGTCTCCGACGTCAAGGAAGCAGCCGTCGCCGAACCCACGGAGGGCCTCGATCTCTCCCGGGAGAAGGTTGTCTGGGGTTCTCAAGTTTTCTCCCGCCGTCGTGGATTCCTCCGCCAAGAAGAAGATGGTCGCCGGAATGTCCAAGGTCTCCGACGCGCTCGTTGGGTCCGCGACGAAGACTGCGAGGAAGAGCTGGGATGAGCAAAACATTGAAGCTGAAACCAAAGAAAAGGGTAGTGGTGGTGNTGCTGCGTCTAAAAACAAGGTTGACTCTCAAGCAATTTTGCGTACTCAGGCTGCGATGTCAAGGCGATTAAGTGATGCGAATGGTCAGAAATCCAGTGGCAGTGATTCTTTTTCTTCCACCAATGNGAAGACTAAAGCTGGTTCTCCTCAAACCCAAAGTTGTTTGGAGCAAGAGAAACCCAGTTTTGCAGCTCTGGGCATCACTATCCATGAAAAGAAATGGACTGATGGAAGTGTTCCCTTCGATGCTGTGTCTGCCAACCTTTCAAGGCTTGCAAAGGAAGCAATGCAAAGGAAAGCTCTCGCTTCTGCTGCTGCTGCTGAAGCATTAGAGGAAGCCAATGCCACCGAATGTATAATAAGAAATTTAAGCATGTTTTCAGACCTGTGCTCCGTGTGCCAGGCCAGAAATCCTTTGCCAACCATAGACAGATTTTTCAATATCTACGAGGATGTTCTGAGATCAACTGCAATTGCTGAATCAGTTGCTAATAGTCACAATTCTGAGACACCAGATGACAGCATTCCAACAGAGCAGTCAAAATCTCTCTCTCTCTGGGTGGAAGCTGCTTTGGCCACTGATCTTCAGATAGTATCCCTTCTCACTGGCACCGGCGCTGATCCTCCATCAACACTGCAAAAAAGCTTGTCAAAGCGACACTCTCTTAGCACAGCCAAGAATCATGTGAAGGTTTCTTCATCTCCACAATCCATTCCAAGTGCTGCTGGTGTGTGGACAAGAGGAAGTGGAATGAAAGAGACAGTTGAGCTTGGAACGAATTTGCTGTCTGAAATGCAAATGTGGTTTCTACGTTTTGTAGAAGAGTCCCTTGAAGCAGGGTTTAAAGTGTTTGCAGAGTGTGGTGCTGATGGGAAAAAAGCGTTGCCTCTTGATGGTGGCTCCATTGCTGTTGTTTTATCACATTTGAAGCGTGTGAATGCATGGCTGGACCGTGTGGTTTCCAAAGGGAATGACTCACTGAGTGATAAGATTGAAAAATTGAAGAGAAAGATCTATGGCTTTGTTATTCAGCATGTGGGATCAACTTTCGATAATTCCGCTTCCCCATCCTGA

Protein Sequence

>Glyur000267s00016690.1
MLLDESKFDVHFKLWALRIPCQLCKVATRILNGYLLDKPRVKPITEDPTCDKNRYLILSEKVQNQDLSDIPKQKLDELKDLCGIEVLPYSLTLGYSYWSAGQIAHLNLXDELLPFKDVIAKKNYPRIXTVVNKVGTITNEFRVPAFEILAGEHDMITEVKQYDWNMNTKVDTKDLGDCNNSSLEDIQGSAGHAAKSVIAGNGKAHGTGILEGGGKKGSTNKRKRGSEISVARTWEHIDHVIMNLPASAVQFLDAFRGLIQRKYWKGHLPWIHCYCFIRATETPESIIAEAESALNASILDSRFHRVRDVAPNKVDTYLNIAKSNKMAQEKGIHVWYTMAFFLVCLSMASCVSGVGVNWGTMATHQLPPEKVVKMLQENGFDKLKLFDADEWIMAALLGTDIEVMLAIPNSMLEXISKDPEAAESWVYENVTSYLYPGGLNIKYIAVGNEPFLKEYNGTYLQSTLPALKNIQASLNSAGVGSKIXATVPFNADVYYSPDTNNQVPSAGDFRPEVRDLTIEIINFLYSNNAPFTVNIYPFLSLYGNDHFPFDXAFFDGSNKPLVDGNSLYTNVFDANLDTLLWALEKAGYPDMHVIVGEVGWPTDGDWNANVVNAKRFNMGLLKHALSGNGTPKRKGIIDIYLFSLIDENXKSIAPGNFERHWGIFEFDGKPKYELDLRGLEEDKGLVPVEGVKYMEKQWCVLDSDAAKDLRYLLAESVNNQRDWDCDFSGLAILTDEDPSEKGCQFPVMISDASSSLLKKAFSAMNSDTRVTGDHRSPLLQVIGIVPALAGSDLFSXQQGFYLNLSDSLNSTYVLLPHPDSDLILSNRLHLGQFVHVDRFXFHSPLPTVSSLRPLPGRHPFQGTPEPLVARISPSSRHFLIQPLSDSAQDPLSLYLSTTNTNTNTTNNTNTNTSEQQQQQQQPTQNNSRQPLAPRDNLPPPQRFSSPAAAKRSHSAGRNKNVSAAERDPSPAGKGKRSASPVPSKCVVPSLVSAREESRKVNREPAIIVPSRYRQPSPTSRKQPSPNPRRASISPGRRLSGVLKFSPAVVDSSAKKKMVAGMSKVSDALVGSATKTARKSWDEQNIEAETKEKGSGGXAASKNKVDSQAILRTQAAMSRRLSDANGQKSSGSDSFSSTNXKTKAGSPQTQSCLEQEKPSFAALGITIHEKKWTDGSVPFDAVSANLSRLAKEAMQRKALASAAAAEALEEANATECIIRNLSMFSDLCSVCQARNPLPTIDRFFNIYEDVLRSTAIAESVANSHNSETPDDSIPTEQSKSLSLWVEAALATDLQIVSLLTGTGADPPSTLQKSLSKRHSLSTAKNHVKVSSSPQSIPSAAGVWTRGSGMKETVELGTNLLSEMQMWFLRFVEESLEAGFKVFAECGADGKKALPLDGGSIAVVLSHLKRVNAWLDRVVSKGNDSLSDKIEKLKRKIYGFVIQHVGSTFDNSASPS

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00267	209156	221231	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH17,CBM43

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0005975 carbohydrate metabolic process

molecular_function
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000267s00016690.1	PF02475.11	Met_10	96	172	1.70E-09
Glyur000267s00016690.1	PF00332.13	Glyco_hydro_17	354	675	2.80E-70
Glyur000267s00016690.1	PF06075.7	DUF936	756	1451	9.30E-145
Glyur000267s00016690.2	PF02475.11	Met_10	96	401	2.30E-55
Glyur000267s00016690.2	PF00332.13	Glyco_hydro_17	481	802	3.20E-70
Glyur000267s00016690.2	PF06075.7	DUF936	883	1578	1.10E-144

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.968
SRR1783600	control	2.934
SRR1783602	moderate drought stress	3.865
SRR1811619	moderate drought stress	3.817

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.832
DRR006520	Root Summer glycyrrhizin high producing strain	5.913
DRR006521	Root Winter glycyrrhizin high producing strain	3.885
DRR006522	Root Winter glycyrrhizin high producing strain	3.661
DRR006523	Root Summer glycyrrhizin low producing strain	4.211
DRR006524	Root Summer glycyrrhizin low producing strain	4.480
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.776
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.748

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	11.157
SRR2868004	Drought Stress (root)	9.004
SRR2967015	Control (root)	10.767

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.563
SRR9715740	Leaf	4.548
SRR9715741	Leaf	3.789
SRR9715739	Root	3.050
SRR9715742	Root	4.408
SRR9715743	Root	3.938

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	8.972
SRR8749028	MeJA induced 9h	7.675
SRR8749029	MeJA induced 9h	5.779
SRR8749030	Uninduced	2.049
SRR8749031	Uninduced	1.275
SRR8749032	Uninduced	1.764

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	11.316
SRR8400027	Control - Root	10.099