Gene detail information of Glyur000267s00016676 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G26910.1 | 2.00E-106 | pleiotropic drug resistance 4 |
| NR | AES91397.2 | 1.06E-142 | drug resistance transporter-like ABC domain protein [Medicago truncatula] |
| COG | YP_007095183.1 | 6.00E-10 | ABC-type multidrug transport system, ATPase component [Chamaesiphon minutus PCC 6605] |
| Swissprot | tr|O81016|AB32G_ARATH | 4.00E-119 | ABC transporter G family member 32 |
| trEMBL | tr|G7JU55|G7JU55_MEDTR | 4.00E-143 | Drug resistance transporter-like ABC domain protein {ECO:0000313|EMBL:AES91397.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00267 | 118722 | 134035 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000267s00016676.1 | PF14510.1 | ABC_trans_N | 64 | 129 | 8.80E-12 |
| Glyur000267s00016676.1 | PF00005.22 | ABC_tran | 139 | 267 | 1.60E-07 |
| Glyur000267s00016676.1 | PF00005.22 | ABC_tran | 334 | 426 | 5.50E-08 |
| Glyur000267s00016676.2 | PF14510.1 | ABC_trans_N | 64 | 129 | 8.60E-12 |
| Glyur000267s00016676.2 | PF00005.22 | ABC_tran | 139 | 260 | 1.00E-07 |
| Glyur000267s00016676.2 | PF00005.22 | ABC_tran | 326 | 418 | 5.30E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 13.882 |
| SRR1783600 | control | 14.088 |
| SRR1783602 | moderate drought stress | 10.971 |
| SRR1811619 | moderate drought stress | 10.650 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.063 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.043 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.038 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.064 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 8.955 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 9.175 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 15.845 |
| SRR2868004 | Drought Stress (root) | 9.447 |
| SRR2967015 | Control (root) | 6.642 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 13.139 |
| SRR9715740 | Leaf | 2.938 |
| SRR9715741 | Leaf | 2.883 |
| SRR9715739 | Root | 6.373 |
| SRR9715742 | Root | 7.968 |
| SRR9715743 | Root | 7.293 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.040 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.103 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.035 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 71.403 |
| SRR8400027 | Control - Root | 75.728 |