Gene detail

Gene detail information of Glyur000267s00016672

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G26900.1	2.00E-154	Sodium Bile acid symporter family
NR	XP_004508558.1	0	PREDICTED: sodium/pyruvate cotransporter BASS2, chloroplastic-like [Cicer arietinum]
COG	YP_001820971.1	6.00E-88	bile acid:sodium symporter [Opitutus terrae PB90-1]
Swissprot	tr\|Q1EBV7\|BASS2_ARATH	0	Sodium/pyruvate cotransporter BASS2, chloroplastic (Precursor)
trEMBL	tr\|G7JU57\|G7JU57_MEDTR	0	Uncharacterized protein {ECO:0000313\|EMBL:AFK39404.1}

Sequence

Transcript Sequence

>Glyur000267s00016672.1
GGACTGGTAACGATTATTAGTATGCTTGTGCATTTATACCCTCCCTATCCGCAAGGATATGGATGAGGGTGCAATGGTGTTTGTGGCCCATCTGCTTCCACGACATCCTCAATAATCCACAAACCCCCAAACTTGTCGTTCTCAAATCTCATTTCGGAGTAGATTCCCAAGTTTCCAGCTCACTGGGTCTACTTGGCCTTCATTTATTACAGTATCACACAGAACCCACATTCCATATTCTCTCAATAAACCCCTTTTGCAGCTAAAACCCACACAATTCACAATCACCCTGATTTCNAAATCCCAATCCATGGCTTCCATGCCTAGAATCATTTTCAGAGATCACAGGCTCGGCGCATGCAATGCGCTGCTTAAACCAAGCTCTAGCGCTTTCCCTCGAAGGAAGATCCACAGTACCCATCTGGACGTAAGAGGCGAGTTTTTTCTGCCCGAGAATGGAAGAAGCTGTGCAATCCGGAGTGAGTTGCGGGGTCCAGTTTTTGCTGCTGCTAGAAGCCCCTTAATCAATCTAACGTCGAAAAGGAACTCACAAATAATGTGCACGGCTGCAACAAACATTTCTGGAGATATTCCTGAAAGTGGGGGCATGAGCCAGTATGAGAAAGTGATTGAAACCTTAACCACTCTTTTTCCAGTGTGGGTCATCTTGGGGGCTGTTGTCGGCATTTACAAGCCAGCTGCTGTAACTTGGTTGGAGACAGACCTTTTTACTCTTGGCTTGGGTTTCCTCATGCTGTCTATGGGCTTGACATTGACTTTTGAGGATTTCAGACGATGCATGCGAAATCCGTGGACTGTGGGTGTGGGGTTTCTTGCACAATATTTAATTAAGCCCATGCTAGGCTTTGCCATTGCAATGACTCTAAAACTTTCGGCTCCTCTTGCAACTGGTCTTATTCTGGTCTCATGTTGTCCTGGAGGTCAGGCATCAAATGTTGCAACATACATATCCAAGGGAAATGTTGCACTCTCTGTTCTTATGACAACGTGTTCAACTATTGGAGCTATAATTATGACACCACTCCTTACAAAGCTTCTAGCTGGTCAACTTGTTCCAGTTGATGCTGCTGGCCTGGCAATTAGCACCTTTCAGGTTGTGTTAGTCCCAACAGTTGTGGGAGTTTTGGCAAATGAGTTTTTCCCCAAGTTTACTTCAAAGATAATCACGATTACACCTTTGATAGGAGTTCTTTTAACCACTCTCCTTTGTGCAAGCCCGATTGGGCAAGTTTCAGAAGTCTTAAAAACTCAAGGAGCTCAATTAATATTGCCAGTTGTTGCCCTACATGCTGCTGCATTTGCTCTTGGTTATTGGATTTCAAAATTATCATTTGGTGAATCCACATCACGCACAATATCTATTGAGTGTGGGATGCAGAGCTCTGCACTTGGATTCTTGCTTGCTCAGAAGCACTTTACAAACCCCCTTGTGGCTGTTCCTTCTGCCGTTAGTGTTGTCTGCATGGCGCTTGGGGGGAGTGCTCTAGCTGTGTATTGGAGGAATACACCAATTCCCCTTGATGACAAAGATGACTTCAAGGAGTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00267	92161	97828	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0016020 membrane

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000267s00016672.1	PF01758.11	SBF	141	314	4.20E-50

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	36.440
SRR1783600	control	36.017
SRR1783602	moderate drought stress	25.935
SRR1811619	moderate drought stress	26.780

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	24.104
DRR006520	Root Summer glycyrrhizin high producing strain	23.805
DRR006521	Root Winter glycyrrhizin high producing strain	9.899
DRR006522	Root Winter glycyrrhizin high producing strain	10.341
DRR006523	Root Summer glycyrrhizin low producing strain	17.011
DRR006524	Root Summer glycyrrhizin low producing strain	16.985
DRR006525	Leaf Summer glycyrrhizin high producing strain	18.393
DRR006526	Leaf Summer glycyrrhizin high producing strain	18.081

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	41.729
SRR2868004	Drought Stress (root)	36.305
SRR2967015	Control (root)	27.980

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	98.801
SRR9715740	Leaf	96.433
SRR9715741	Leaf	128.178
SRR9715739	Root	21.772
SRR9715742	Root	36.330
SRR9715743	Root	29.052

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	23.187
SRR8749028	MeJA induced 9h	36.590
SRR8749029	MeJA induced 9h	16.295
SRR8749030	Uninduced	8.270
SRR8749031	Uninduced	4.362
SRR8749032	Uninduced	4.949

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	49.154
SRR8400027	Control - Root	50.926