Gene detail

Gene detail information of Glyur000267s00016664

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G40010.1	5.00E-95	AAA-ATPase 1
NR	KEH21596.1	2.53E-131	P-loop nucleoside triphosphate hydrolase superfamily protein [Medicago truncatula]
COG	YP_591316.1	3.00E-18	ATPase AAA [Candidatus Koribacter versatilis Ellin345]
Swissprot	tr\|Q9SCN8\|CD48D_ARATH	1.00E-08	Cell division control protein 48 homolog D
trEMBL	tr\|A0A072TWK9\|A0A072TWK9_MEDTR	9.00E-132	P-loop nucleoside triphosphate hydrolase superfamily protein {ECO:0000313\|EMBL:KEH21596.1}

Sequence

Transcript Sequence

>Glyur000267s00016664.1
ATGTTCAAATCACCTTCCCTGAGTTCTCAGGGGAGAAACTCAAGCGAAGTGAAGCCTACACAGCCATCCAAACATATCTCAGTGCGAACTCATCGCAACGAGCTAGATAGGCTCAAAGCTGAAGTTGTCAAAGATAGCCAAACCCCACTTGTGCTTAGCATGGATGACAGTGAAGAGATCACAGATGAGTTCAAAGGGGGGAAGGAAATTGAGATGAGGAATAGGCAATTGAAGCTTTACACCAACAATCCAAGTAGTGGATGGTATGCTTACAAACAAACAAAGTGGAGCCACGTAGTGTTTGAGCACCCTGCAACATTTGAGACACTAGCAATGGAACAACAAAAGAAAGAAGAGATTTTGAATGACCTTGTGAAATTCAAAGAAGGGAAAGAGTACTATGCTAAGATAGGTAAGGCTTGGAAGAGAGGGTACCTTTTGTACGGTCCCCCAGGAACTGGTAAGTCTACAATGATAGCTGCAATTGCAAATTTCATGAACTATGATTTGTATGATCTTGAGTTGACTGCAGTCAAAGACAACACTGAGCTAAGAAGGCTTCTAATTGAAACTCCAAGCAAATCCATCATAGTGATTGAAGACATTGATTGTTCTCTTGATCTCACTGGCCAGAGGAAGAAGAAGAACAAAAAGGAAGCAAGTGGGAATGATGATGATAAAGGGTCAAAGAAGAGTTCTGCAAGGAAAGCTGAGGAGGAAGATAATAAAGGGAGTAAACGCTTCATCCCACCTCGTCTTCGTTATCTTGTTGAAGTTTACACAAAAAAATGGACCAATCTCATGAACCCTTATGTTCAAATCACCTTCCCTGAGTTCTCAGGGGAGAGACTCGAGCGCAGTGAAGTCTACACAGCCATCCAAACATATCTCAGTGCGAAGTCAACGCAACTAGCTAATAGGCTCAAAGCTGAAGTTTTCAAAGACAGCCAAACCCCAGTTGTGCTTAGCATGGATGACAGTGAAGAGATCACAGATGAGTTCAAAGGGGGGAAGGAAATTGAGATGAGGAATAGGCAATTGAAGCTTTACACCAACAATCCAAGTAGTGGATGGTATGCTTACAAACAAACAAAGTGGAGCCACGTAGTGTTTGAGCACCCTGCAACATTTGAGACACTAGCAATGGAACAACAAAAGAAAGAAGAGATTTTGAATGACCTTGTGAAATTCAAAGAAGGGAAAGAGTACTATGCTAAGATAGGTAAGGCTTGGAAGAGAGGGTACCTTTTGTACGGTCCCCCAGGAACTGGTAAGTCTACAATGATAGCTGCAATTGCAAATTTCATGAACTATGATTTGTATGATCTTGAGTTGACTGCAGTCAAAGACAACACTGAGCTAAGAAGGCTTCTAATTGAAACTCCAAGCAAATCCATCATAGTGATTGAAGACATTGATTGTTCTCTTGATCTCACTGGCCAGAGGAAGAAGAAGAACAAAAAGGAAGCAAGTGGGAATGATGATGATAAAGGGTCAAAGAAGAGTTCTGCAAGGAAAGCTGAGGAGGAAGATAATAAAGGGAGTAAAGTGACACTTTCTGGGTTGTTGAATTTCATTGATGGGATT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00267	40522	46502	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005524 ATP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000267s00016664.1	PF14363.1	AAA_assoc	31	67	0.0001
Glyur000267s00016664.1	PF00004.24	AAA	146	209	1.30E-07
Glyur000267s00016664.1	PF14363.1	AAA_assoc	249	337	1.50E-18
Glyur000267s00016664.1	PF00004.24	AAA	416	479	1.30E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	19.656
SRR1783600	control	19.616
SRR1783602	moderate drought stress	25.024
SRR1811619	moderate drought stress	24.463

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	14.613
DRR006520	Root Summer glycyrrhizin high producing strain	15.799
DRR006521	Root Winter glycyrrhizin high producing strain	5.865
DRR006522	Root Winter glycyrrhizin high producing strain	5.201
DRR006523	Root Summer glycyrrhizin low producing strain	19.201
DRR006524	Root Summer glycyrrhizin low producing strain	19.419
DRR006525	Leaf Summer glycyrrhizin high producing strain	32.092
DRR006526	Leaf Summer glycyrrhizin high producing strain	32.746

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	12.826
SRR2868004	Drought Stress (root)	9.012
SRR2967015	Control (root)	13.416

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.539
SRR9715740	Leaf	2.251
SRR9715741	Leaf	5.049
SRR9715739	Root	0.921
SRR9715742	Root	4.396
SRR9715743	Root	4.134

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	10.313
SRR8749028	MeJA induced 9h	13.087
SRR8749029	MeJA induced 9h	4.318
SRR8749030	Uninduced	3.929
SRR8749031	Uninduced	0.892
SRR8749032	Uninduced	0.762

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	35.024
SRR8400027	Control - Root	43.668