Gene detail

Gene detail information of Glyur000266s00012649

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G24180.2	0	Beta-glucosidase, GBA2 type family protein
NR	XP_004495235.1	0	PREDICTED: non-lysosomal glucosylceramidase-like isoform X2 [Cicer arietinum]
COG	YP_590763.1	2.00E-90	hypothetical protein Acid345_1688 [Candidatus Koribacter versatilis Ellin345]
trEMBL	tr\|V7BEC6\|V7BEC6_PHAVU	0	Non-lysosomal glucosylceramidase {ECO:0000256\|PIRNR:PIRNR028944}

Sequence

Transcript Sequence

>Glyur000266s00012649.1
ATGGTTAGCGGGAATATTTTTCACTGTAGAAAGAATTCGTGGCCTCCTGAAGAGTATATCAGTAGAAACACTTTACAATTGTTTGATTTCGATAGTGCTGGTCCGCCTGAACAAGCTTGGAGAAGGAGATTAAACAGCCATGCCAATCTTCTTAAAGAATTTAGAGTTCGATTGGGGATACGCATGTGGTCATATGTTAGGGAAGAGGCTTCTCATGGAAGGAAAGCACCTATAGATCCTTTCACTCGAGAAAGTTGCAAGCCATCTGCATCTCAAGGAGTTCCACTTGGAGGGATGGGGAGTGGAAGCATTTCAAGAGGATTTAGGGGCGAGTTCAGACAATGGCAAATAATTCCTGGTTTATGTGAAGCATCGCCTGTCATGGCCAACCAATTCTCTATTTTTGTAAGTAGAGATGGAGGAAACAAAAATTTTGCGTCAGTTTTGGCTCCTGGCCAGCATGAAGGTTTAGGATCTAGCAGGAAAGCTGATGATCAGGGTATATCATCATGGGGATGGAATCTAAGTGGCCAGCACTCAACTTACCATGCTTTGTTTCCAAGAGCTTGGACAATTTATGATGGTGAGCCAGACCCAGAACTAAAAATATCGTGCCGGCAGATATCCCCTTTCATACCACATAATTATAGAGAAAGCAGTCTACCTGCTGCTGTTTTTGTCTATACGTTGGTAAACACTGGTAAGGAAAGAGCTAAAGTCAGCCTTCTATTTACTTGGGCGAATTCCATTGGTGGAAACTCACACTTGTCAGGAGATCATGTGAATGAACCATTCATGACAGCGAAAGACAACCCTCCTGTTACTTTTGCCATAGCGGCATGCGAAACACAGAATGTTAGTGTTTCTGTTTTGCCGAGTTTTGGGCTGTCTGAAGGAAGTAGCGTAACAGCGAAAGGAATGTGGCGTAAAATGGTGAAGGATGGGCAATTTGACCGGGAGAATTTCTCTTCTGGACGTAGCATGCCCTCGTCACCTGGGGAGACACTATGTGCTGCTGTTTCAGCTTCCACATGGGTGGAACCCCATGGAAAATGCACTGTTGCATTTAGTGTTGCATGGTCATCTCCAAAAGTAAAGTTTGTGAAAGGAAGCTCTTTCCACAGGAGATATACAAAATTTTATGGGACTTCTGAGAGAGCTGCAGTGGACTTGGCTCATGATGCATTAACACATTACAAACGGTGGGAGGAAGAGATTGAGAAATGGCAGAGTCCTGTTCTCAAGGATGAGACACTACCAGAATGGTACAAGTTTACTTTGTTTAATGAACTCTACTTTCTTGTTGCTGGAGGAACAATTTGGATTGACTCTCCTTTGCTATCTTCAAATATGAGGAATGGCCAGGATCAGGTGAAAGAGTTGGAAAATGCAGTTGGTGTAGTAACTGAAGCTAAAGTGGATTGCAGAAAAAGGGTAGTTATCGACTATACAATAGATAGTACCTATGACTCTACTGCTTCTAGGGGACAGAATCATGTGGATGAAAAACATTATGGAGGTGTATCCCATGAAAATGAATCTGTTAATACTCTCAGAAATGGACACTCCACTGACACACTGCATTCCTCAACAATGAACCTGCAATACAATGATGATGATGTTGGAAGGTTCTTGTACTTGGAAGGTGTGGAATATGTCATGTGGTGCACGTATGATGTGCACTTCTATGCTTCATTTGCACTTCTTATGCTCTTTCCTCGTATTGAATTAAACATACAGCGTGACTTTGCCAAAGCGGTCTTGTGCGAAGATGGAAGAAAAATAAAGTTTCTGGCAGAGGGAAACTGGGGAATTCGTAAGGTTTATGGGGCTGTGCCGCATGATTTGGGGACACATGATCCATGGTATGAAATGAATGCTTACAACATTCATGATACTAGTAAGTGGAAGGACCTGAACCCAAAATTTGTACTTCAGGTTTATCGAGATTTTGCTGCAACAGGTGATTTGCAATTTGGAGTAGATGTGTGGCCTGCTGTCCGTGCTGCAATGGAGTACATGGAGCAATTTGATAGAGATGGTGATGGACTTATTGAGAATGATGGTTTTCCTGATCAAACATATGATACATGGACAGTCCATGGTGTGAGTGCGTACTGTGGTTGTATTTGGCTTGCTGCTCTTCAGGCTGCAGCTGCAATGGCCATTGAACTAGGTGACAGAGAGTTTGCAGAAACATGCAAAAGGAAGTTTATGAAGGCTAAGCCAGTATTTGAAGAAAAGCTGTGGAATGGTTCTTATTTTAACTATGACAGTGGATCAAGTGGTAACAGTAAATCCATTCAGGCCGATCAATTGGCTGGGCAATGGTATACAGCATCCTCAGGGCTGCCCTCTCTTTTTGATGATTTCAAAATCAAAAGTGCTCTCCGTAAGGTTTATGATTTCAATGTCATGAAAATTAAAGGTGGCAGGATGGGTGCTGTAAATGGCATGCATCCCAATGGTAAGGTAGATGAGACCTGTATGCAGTCTCGAGAAATATGGACAGGTGTGACCTATGGTGTTGCTGCGACAATGATACTTGCAGGAATGGAAGAAGAGGCCTTCAAAACTGCCGAGGGTATATTTCTAGCAGGCTGGTCACAAGATGGATACGGATACTGGTTTCAGACTCCAGAGGCATTGACGATTGATGGGCATTACCGGTCCCTCATATATATGAGGCCACTGTCAATTTGGGGCATGCAATATGCATTAACTCTGCCAAAGGCAATTCTTGAGGCCCCTAAAATGAACATCATGGACCGAATCCACCTATCTCCTGTTAATGGAGGATTCTCTTATAATGAAACA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00266	213922	223791	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH116

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K17108	GBA2	EC:3.2.1.45	Sphingolipid metabolism	map00600
			Other glycan degradation	map00511

Gene Ontology

biological_process
GO:0006665 sphingolipid metabolic process

cellular_component
GO:0016021 integral component of membrane

molecular_function

GO:0003824 catalytic activity

GO:0004348 glucosylceramidase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000266s00012649.1	PF12215.3	GBA2_N	93	402	9.70E-58
Glyur000266s00012649.1	PF04685.8	DUF608	542	904	9.50E-148

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.541
SRR1783600	control	4.579
SRR1783602	moderate drought stress	5.092
SRR1811619	moderate drought stress	5.026

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	7.466
DRR006520	Root Summer glycyrrhizin high producing strain	7.105
DRR006521	Root Winter glycyrrhizin high producing strain	17.340
DRR006522	Root Winter glycyrrhizin high producing strain	16.859
DRR006523	Root Summer glycyrrhizin low producing strain	7.115
DRR006524	Root Summer glycyrrhizin low producing strain	7.073
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.172
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.156

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	18.817
SRR2868004	Drought Stress (root)	23.468
SRR2967015	Control (root)	24.740

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	9.961
SRR9715740	Leaf	9.560
SRR9715741	Leaf	13.334
SRR9715739	Root	3.007
SRR9715742	Root	12.575
SRR9715743	Root	10.949

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	7.890
SRR8749028	MeJA induced 9h	10.476
SRR8749029	MeJA induced 9h	6.198
SRR8749030	Uninduced	9.790
SRR8749031	Uninduced	19.360
SRR8749032	Uninduced	11.471

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	15.882
SRR8400027	Control - Root	18.064