Gene detail information of Glyur000266s00012646 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G37060.3 | 5.00E-55 | nuclear factor Y, subunit B8 |
| NR | KHN01010.1 | 1.89E-110 | Nuclear transcription factor Y subunit B-8 [Glycine soja] |
| Swissprot | tr|Q8VYK4|NFYB8_ARATH | 5.00E-76 | Nuclear transcription factor Y subunit B-8 |
| trEMBL | tr|V7BEC3|V7BEC3_PHAVU | 3.00E-109 | Uncharacterized protein {ECO:0000313|EMBL:ESW16157.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00266 | 198429 | 201695 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | NF-YB |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000266s00012646.1 | PF00808.18 | CBFD_NFYB_HMF | 36 | 100 | 2.40E-29 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.278 |
| SRR1783600 | control | 3.359 |
| SRR1783602 | moderate drought stress | 1.791 |
| SRR1811619 | moderate drought stress | 1.788 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.256 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.989 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.940 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.632 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.603 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.441 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.632 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.046 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 12.425 |
| SRR2868004 | Drought Stress (root) | 9.832 |
| SRR2967015 | Control (root) | 11.324 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 5.585 |
| SRR9715740 | Leaf | 6.000 |
| SRR9715741 | Leaf | 4.147 |
| SRR9715739 | Root | 3.729 |
| SRR9715742 | Root | 2.956 |
| SRR9715743 | Root | 3.194 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 24.827 |
| SRR8749028 | MeJA induced 9h | 8.794 |
| SRR8749029 | MeJA induced 9h | 16.122 |
| SRR8749030 | Uninduced | 8.733 |
| SRR8749031 | Uninduced | 13.618 |
| SRR8749032 | Uninduced | 9.805 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 13.371 |
| SRR8400027 | Control - Root | 8.902 |