Gene detail

Gene detail information of Glyur000266s00012642

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G25120.1	0	P-loop containing nucleoside triphosphate hydrolases superfamily protein
NR	XP_004495243.1	0	PREDICTED: ATP-dependent DNA helicase PcrA-like [Cicer arietinum]
COG	YP_359945.1	5.00E-83	ATP-dependent DNA helicase PcrA [Carboxydothermus hydrogenoformans Z-2901]
Swissprot	tr\|D1KF50\|SRS2L_ARATH	0	ATP-dependent DNA helicase SRS2-like protein At4g25120
trEMBL	tr\|I1NHX8\|I1NHX8_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA20G34060.1}

Sequence

Transcript Sequence

>Glyur000266s00012642.1
CTTGGCGCCTCCTTTATGCATACACCACACCACACCACACCGCTTCATAGTGGGGTGGCAGTGTTTGACGTTCTCGTTGCGGCACAGAAAATGGCAGACAAGCAAAGTGGCCGAATCTCCGCGTATTTCAGTGCCGCAAAGCCACTTCTTCCTCGAAAAAGGGCTTCTTCTGATTCCTCCCCATCTCATTCAAACCAAATCAAGGGTGCAGGCAATGTTGATGCTGCTCTTAGGGTTACCGTTGCCAAGAGAGTTCCTCTTGCAGAGGTGCCGCTGAATAGGCCCAATGCAACAGGGAATGGCCACGGTGCAATTGCAGCTTCTGATGCAATTCACTGCAGTTCAAGTGCAAGGACAATTGCTGCTCCTTCAGTTGGTGCTGCTGCGAAGGAGAATCTGTGTCAATCAAATTTTGAAACTCCAAGAAAAGAACCTGAAGGCTCTTCTAAACCCGAGCCGCTGGATTACTTCTCCGGGAGTGGCCTTCTCGATGATGATTTCGATGAGTCCATTTTCGAACAAATTGACATTCTGTGTGAGCAGAAATCCGCGGAGAAAGCAGCAGTGACGGGGTTAGATCATAGCTGTCACGAGAGAGTTTCAAGTGAGAGCAGTGCGTTTGGTGGAGTTAATCTGAGTTGGGGAACTAGTGCTGTTTCAGAGGGTATTGGAAATGGTGACCTGCTTAGTAGCTCTGGGGCTGATTTAGATCCTAAAGAAGAAGAACATGTGGATATGGCTCGGCAAAGTTTACAAAGTGGCACCATGCCGGAGGAATATTCAAAGTACTTGCAATCCCTAAATGAGAGGCAAAGAGAAGCAGCTTGCACTGATATGTCTACCCCTTTAATGATCGTAGCTGGTCCAGGAAGTGGAAAGACATCGACAATGGTTGGGCGTGTTTTGATGCTGCTTAATGAGGGTATTAGTCCATCAAACATTCTCGCAATGACATTTACAACAGCAGCAGCTTCTGAAATGAGAGAACGTATTGGAACCATAGCTGGGAAGGCAACGGCAAAAGAGCTTACAATTAGTACTTTTCATTCATTTTCCTTGCAACTTTGTCGTTCACATGCAGAAAAGTTAGGTCGTACATCAGAATTCTTAATATATGGACAGTGGCAACAGNGAAATGCAATTATTGAGGCCATCCGATTATTAGAAAATGAAAAAAGTAGACTTAAAGATGACGCATTGTTGATTGGTGAAATGTCCAATAGTCTAACGACCCCGAAACAGTTCAAGGATAAGGCGAAGAAATGGCAAAATTTTGTGACTCAGGCCAAAGCCTCGGGAAGAACTCCTGCAGAATATCGTGAAATGGGCAATGAAATAGGAGCTGAAATTCTTGAGAATTACAGTAACATANTAAAATCATGTAATGCTCTGGATTATCATGACTTGATCAGCTGTTCAGTGAAGCTACTCACTGATTTTCCTGAAGTTTTCAGAGAAAGTCAAGATTCATGGAAAGCTGTTGTTATAGATGAGTTCCAAGATACTAGTGCCATGCAATACAAGCTTCTAAGCATTCTTGCATCCCATCATAGAATAACAATTATTGGTGATGATGATCAGTCCATTTTCAGTTTCAACGGAGCTGACATTTCTGGATTTATTTCCTTTCGTAATGATTTTCCAAACTACAAAGAGATTAGGCTTAACAAAAACTATCGATCNACACGTTGCATCGTTGAGGCTGCATCTTCTCTTATTCAAAATAATGCCAAGCGATGTCAGTTGAAGAATGTTCTTACTGATAACTCTTCTGGATCCAAGATAGTTATGAAGGAGTGCCATAATGAGGATGCACAATGTGCATTTGTTGTTGACAAAATCTTAGAAATTTCATCTAATCATTCATCAACTAACTGGTCTTATGGCAACATTGCAGTTCTCTACCGTAGGCAGATATCGGGGAAAGCCTTCCAAATGGCTTTCCGGGATAGGAAAATACCGTTCAACACTCACGGTGTAGCTTTTTACAGAAAAAAGGTAGTCAGAACTATCATTGCCATGCTTCGAACAACACTGCCTGGTTGTGATGATGGCTCATATAGTCGAGTCTTCAAGGCTTTACTTCCTTTCGAGAAAGATAAAAAAAAACGGGTAATTGACCATATCAACAAAATTTCAACTATTAGAAAATGCAGTTTCTTATTAGCTGCCTGTGACATCTTTAGTGCAAAGATTTCTGGTACCTTTAAAAGGTTGGNAGAAACATTCTTCCCTGAAAATTTCATCATTCTTATGGATAATAGGAGTGAGCTTGCCCAAGGAAGGAAGGTTTTAATGACACTAGAGATCATATCAAAACTTGTTCAGAGGGAAANATCTGTCTCAGCCATCATAACTTCTGTGGCAAACATGATACCTGAGAAGTACCTTCTTGAGCAACGGGCAACTGCTGATATTGATGGAGGGACATTGTTGAATGAAGACTATGACATCAGATCTGTTCGTCAATACTTGTTAGACGATGTCTCTGAGTTTTTGTCTACTAAATTCATTGAGCTGAAAGGGGAAATGGAAATGTCTGAAGATAAAGGCTGCACTTTTGTGCTAAAAGCATTCATTGATTATTTATTTGAGCGTGAGAGAGAAAATTTTCGTGCTNGGAGGAAGGACAACGAAAATTCTGTGACATTGACTACCATTCATCAGGCAAAAGGTTTAGAGTGGGACATTGTCTTCATAGTTAAGGTAAATGAATCTGAGATCCCTCTATTACATGATTTCAAAGGTGCTGTAAAGGACAATGGGGCCTTAGTTGAGGAAGAAAGACGTTTATTATATGTTGCAATGACTCGTGCTCGGCAGAAGCTTTTTATTCTCTATGTTGTGATGGACTCAAACTGGCAGATGCTTCAACCTTCACGATTTCTGAAAGAAATCCCTCATCATCTTCTAGAGTTTCAGGGTGAAATAAATTTACAAGAGCTACAGGTAAAACAAGAAGCTCATCAAAAGGAAGCGGCTTACTGTACCACTGATTTGTTGATAAAAGAGCAACAATCTGAAGCAGCTTTNGTCCCTGTACCTAAAGAATTACTCAATAATCATTTTAGTGAGGCTTCCAATGAGCTTGCAGAATTTGCAGAGGCAAACAATGGCAGTAACNTCTTAAAAAGATTCAGTGTAGAGGAAAGGTCTGTTGTTTCCCATATATTCCATCAATGGGCCAAAAAGAAAGCATTTCAAGATCCAAAGAGGTTGCTGGATAAGGTTGGTTTTGTAATTGATGAACGCCTTAGACAGAAGGGAAACAGAAACAAGGATTTGTTGAGTACACTAAAGTCTTGCTTATGCTGTGATGAAGCAAATCAGTATGCTCAGTATGTTTTGAGATGGGAGCAAATTCCAGCTGATAAACGTGCTTATCTTATGAGGGAAAAACAGGAACATTTCATGAAACTAAAGATTGAGAATGCAATGGGTTCGGCAACACCAACTGTCAAGCAGATCTCTTATTTGAAAAAACTGGGTTGCACCATGACCCCTACTTCCCGTCTCCATGCGTCTCATCTTATTGAGCAGTACAAATCATTGTAGGAATCGATTCCTGCGATGTTTTGTGTCTGTCCCTCTATATATTGAGCCTTTTCAATCTCAGTGTGTGTGGAGCTGTTTGAATTTTAAACATCCACTAAGGTAAAACTTAAAAGAGATTGTTCTCATATCACCGATTTGTCGATTTGAGCAGTGATATAATTACGGATTTAGTAGTTCCTATCAAGTGAAGATNATGCATACAGATAACAAAGGGTTAAGATGTTGCCACGTGTAACCTAAGCAAAGATGGACCGCCAAGTCNTTGTACAAGAATCACAAGACCCGTTTTT

Protein Sequence

>Glyur000266s00012642.1
LGASFMHTPHHTTPLHSGVAVFDVLVAAQKMADKQSGRISAYFSAAKPLLPRKRASSDSSPSHSNQIKGAGNVDAALRVTVAKRVPLAEVPLNRPNATGNGHGAIAASDAIHCSSSARTIAAPSVGAAAKENLCQSNFETPRKEPEGSSKPEPLDYFSGSGLLDDDFDESIFEQIDILCEQKSAEKAAVTGLDHSCHERVSSESSAFGGVNLSWGTSAVSEGIGNGDLLSSSGADLDPKEEEHVDMARQSLQSGTMPEEYSKYLQSLNERQREAACTDMSTPLMIVAGPGSGKTSTMVGRVLMLLNEGISPSNILAMTFTTAAASEMRERIGTIAGKATAKELTISTFHSFSLQLCRSHAEKLGRTSEFLIYGQWQQXNAIIEAIRLLENEKSRLKDDALLIGEMSNSLTTPKQFKDKAKKWQNFVTQAKASGRTPAEYREMGNEIGAEILENYSNIXKSCNALDYHDLISCSVKLLTDFPEVFRESQDSWKAVVIDEFQDTSAMQYKLLSILASHHRITIIGDDDQSIFSFNGADISGFISFRNDFPNYKEIRLNKNYRSTRCIVEAASSLIQNNAKRCQLKNVLTDNSSGSKIVMKECHNEDAQCAFVVDKILEISSNHSSTNWSYGNIAVLYRRQISGKAFQMAFRDRKIPFNTHGVAFYRKKVVRTIIAMLRTTLPGCDDGSYSRVFKALLPFEKDKKKRVIDHINKISTIRKCSFLLAACDIFSAKISGTFKRLXETFFPENFIILMDNRSELAQGRKVLMTLEIISKLVQREXSVSAIITSVANMIPEKYLLEQRATADIDGGTLLNEDYDIRSVRQYLLDDVSEFLSTKFIELKGEMEMSEDKGCTFVLKAFIDYLFERERENFRAXRKDNENSVTLTTIHQAKGLEWDIVFIVKVNESEIPLLHDFKGAVKDNGALVEEERRLLYVAMTRARQKLFILYVVMDSNWQMLQPSRFLKEIPHHLLEFQGEINLQELQVKQEAHQKEAAYCTTDLLIKEQQSEAAXVPVPKELLNNHFSEASNELAEFAEANNGSNXLKRFSVEERSVVSHIFHQWAKKKAFQDPKRLLDKVGFVIDERLRQKGNRNKDLLSTLKSCLCCDEANQYAQYVLRWEQIPADKRAYLMREKQEHFMKLKIENAMGSATPTVKQISYLKKLGCTMTPTSRLHASHLIEQYKSL

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00266	176950	194787	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003677 DNA binding

GO:0004003 ATP-dependent DNA helicase activity

GO:0005524 ATP binding

GO:0016787 hydrolase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000266s00012642.1	PF00580.16	UvrD-helicase	267	547	9.10E-63
Glyur000266s00012642.1	PF13361.1	UvrD_C	553	948	6.30E-49

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.597
SRR1783600	control	6.675
SRR1783602	moderate drought stress	9.061
SRR1811619	moderate drought stress	8.783

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	8.734
DRR006520	Root Summer glycyrrhizin high producing strain	8.737
DRR006521	Root Winter glycyrrhizin high producing strain	3.467
DRR006522	Root Winter glycyrrhizin high producing strain	3.511
DRR006523	Root Summer glycyrrhizin low producing strain	11.601
DRR006524	Root Summer glycyrrhizin low producing strain	11.486
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.076
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.986

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	25.033
SRR2868004	Drought Stress (root)	24.229
SRR2967015	Control (root)	25.953

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.748
SRR9715740	Leaf	3.811
SRR9715741	Leaf	4.496
SRR9715739	Root	0.785
SRR9715742	Root	4.263
SRR9715743	Root	3.883

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	16.834
SRR8749028	MeJA induced 9h	13.763
SRR8749029	MeJA induced 9h	13.512
SRR8749030	Uninduced	6.608
SRR8749031	Uninduced	9.318
SRR8749032	Uninduced	8.328

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	22.308
SRR8400027	Control - Root	17.759