Gene detail information of Glyur000266s00012634 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G17740.2 | 0 | Peptidase S41 family protein |
| NR | KHN01016.1 | 0 | Carboxyl-terminal-processing protease [Glycine soja] |
| COG | YP_007111060.1 | 5.00E-120 | C-terminal processing peptidase-2 [Geitlerinema sp. PCC 7407] |
| Swissprot | tr|O23614|CTPA2_ARATH | 0 | Carboxyl-terminal-processing peptidase 2, chloroplastic (Precursor) |
| trEMBL | tr|I1NHY3|I1NHY3_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA20G34110.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00266 | 137481 | 142306 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000266s00012634.1 | PF00595.19 | PDZ | 199 | 272 | 2.50E-09 |
| Glyur000266s00012634.1 | PF03572.13 | Peptidase_S41 | 309 | 469 | 9.30E-51 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.547 |
| SRR1783600 | control | 3.496 |
| SRR1783602 | moderate drought stress | 4.571 |
| SRR1811619 | moderate drought stress | 4.411 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.963 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.872 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.243 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.261 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.348 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.409 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 19.284 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 19.193 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 6.124 |
| SRR2868004 | Drought Stress (root) | 8.734 |
| SRR2967015 | Control (root) | 7.653 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 18.706 |
| SRR9715740 | Leaf | 23.903 |
| SRR9715741 | Leaf | 14.763 |
| SRR9715739 | Root | 1.266 |
| SRR9715742 | Root | 3.042 |
| SRR9715743 | Root | 1.347 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 8.383 |
| SRR8749028 | MeJA induced 9h | 5.314 |
| SRR8749029 | MeJA induced 9h | 5.511 |
| SRR8749030 | Uninduced | 9.943 |
| SRR8749031 | Uninduced | 6.723 |
| SRR8749032 | Uninduced | 5.059 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 8.245 |
| SRR8400027 | Control - Root | 7.755 |