Gene detail

Gene detail information of Glyur000266s00012632

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G33255.1	8.00E-92	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
NR	AES60978.2	1.06E-137	haloacid dehalogenase-like hydrolase [Medicago truncatula]
COG	YP_003368675.1	8.00E-24	HAD-superfamily hydrolase [Pirellula staleyi DSM 6068]
Swissprot	tr\|Q8RYE9\|GPPL3_ARATH	8.00E-116	Haloacid dehalogenase-like hydrolase domain-containing protein At2g33255
trEMBL	tr\|G7I2P1\|G7I2P1_MEDTR	4.00E-138	Haloacid dehalogenase-like hydrolase {ECO:0000313\|EMBL:AES60978.2}

Sequence

Transcript Sequence

>Glyur000266s00012632.1
AAAAGGGGGAAAAAAATGCTGCGGCTGTGTTCGTTCCTCCCACAAACCACAGTGAGGAGAATGAGAACCAGAACCATAAATCTGGCATCAGTNCTAGTCGCCACCAAAGGCATCATCACCATCAGAAATAATATTAGTATTAATATCACTACTAATATTAACATTAGTATTCTTCATCTTCTTCTTATTATTTGTAGTTATTATTATTATCCAACACAAACACAGCACAAGTGGAACTAACTCGATGCCATTGCTCACCACGAGGGCTCTCCTCTCTACGACTACCTCAGCGTTCCTTCTGTTGCCACGCTCGAAGCTAATTCACATGTCGTCTAATTACCCTGCCGCCACCAAAACGCGGCTGAGGGGTGTCGTTTTCGACATGGACGGCACCCTCACCGTCCCCGTCATCGATTTCCCCGCCATGTACAGGGCGGTGCTCGGCGACGACGAGTACCGGCGGATCAAGTCCGAGAGCCCCTCGGGAATCGACATATTGAAGCACATCGAGCAATGGCCTCCCCAGCAACAGCGCCACGCCTACGACACCATCGCCCATTTCGAGCGCCAGGGTCTCCACCGCCTCCAAATCATGCCCGGTGCTGCTGACCTTTGTCACCTCCTCGATTCAAAGAAAATAAGGAGGGGGTTGATCACGCGCAATATGAAGTCAGCAGTTGATTTATTCCACGAACGATTTGGGATTACATTTTCTCCGGCATTGAGCAGGGAATTTCGTCCTTATAAACCCAATCCGGCTCCACTACTGCATATTTGTTCTCTTTGGGAAGTTCAACCAAATGAAGTTATAATGGTCGGGGATAGCCTTAAAGATGANGTGAGTGTGGCTTGTGGAAGGCAAGCAGGAGCATATACATGCTTGCTTGATGAAACGGGAAGATATGATTCTCCTGAGTATGCTGATGTTGATTTCAAACCAGATTTCAAGGTGACTTCCCTCGCTGAAGTTTACTCAATTCTGGAGAATTATTTTGATTTGTCACCATGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00266	132866	135544	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0008152 metabolic process

molecular_function
GO:0016787 hydrolase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000266s00012632.1	PF13419.1	HAD_2	43	211	2.60E-13
Glyur000266s00012632.2	PF13242.1	Hydrolase_like	110	183	8.50E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.917
SRR1783600	control	8.042
SRR1783602	moderate drought stress	8.089
SRR1811619	moderate drought stress	7.884

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	10.125
DRR006520	Root Summer glycyrrhizin high producing strain	10.274
DRR006521	Root Winter glycyrrhizin high producing strain	4.457
DRR006522	Root Winter glycyrrhizin high producing strain	4.642
DRR006523	Root Summer glycyrrhizin low producing strain	6.741
DRR006524	Root Summer glycyrrhizin low producing strain	7.326
DRR006525	Leaf Summer glycyrrhizin high producing strain	22.253
DRR006526	Leaf Summer glycyrrhizin high producing strain	21.954

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	12.031
SRR2868004	Drought Stress (root)	13.947
SRR2967015	Control (root)	13.251

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	46.281
SRR9715740	Leaf	47.488
SRR9715741	Leaf	40.098
SRR9715739	Root	3.729
SRR9715742	Root	7.993
SRR9715743	Root	5.489

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.299
SRR8749028	MeJA induced 9h	6.347
SRR8749029	MeJA induced 9h	3.035
SRR8749030	Uninduced	15.347
SRR8749031	Uninduced	8.454
SRR8749032	Uninduced	7.569

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	13.841
SRR8400027	Control - Root	9.829