Gene detail

Gene detail information of Glyur000266s00012629.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT4G13430.1	isopropyl malate isomerase large subunit 1
NR	XP_003555497.1	PREDICTED: 3-isopropylmalate dehydratase-like [Glycine max]
COG	YP_007091479.1	homoaconitate hydratase family protein [Chroococcidiopsis thermalis PCC 7203]
Swissprot	tr\|Q94AR8\|LEUC_ARATH	3-isopropylmalate dehydratase large subunit (Precursor)
trEMBL	tr\|I1NHY9\|I1NHY9_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA20G34160.1}

Sequence

Transcript Sequence

>Glyur000266s00012629.1
CCATTTTGGTCTTGACATCCTCTGTTTTCGCACCAAAGGGAAAACAAAATAAAACAAAACATTGGTTATTGATCTCCCTATATTATTTGATCATCTAATTTGCAATACCTATCTATCTAGCGTGCTTCATTCATGGCCTTCATCTGTTCACCTTTCATCACTTGCAAGAGAGATTTGGGTTTCTTTGCTTTTCCTTCATCACCCTTTATCACTGATGATCAGAAATGCAAGAAAACAATATCAAAGAAGATTGTTTCTGCTGTGCCATCATCCCAGAAGAACAAAAACAGCCCTTGTGTTTCTGCAGCTGGCTCGATGAAGACGACTCCGATGACAGCGACGGAGAAGATACTAGCCAGAGCTTCTGAGAAGAGTGAGGTTTGGGACCGTGAAAAGATTGTAGTTATCCCTGATCATTACATTTTCACAAATGATGAGCGTGCACACCGTAATGTGGATATTGCAAGAGACTTTTCTCTGGAGCAAGATATTAAGTACTTCTATGATATTCAAGATCGCAGTAACTTCAGGGCTAACCCTGATTATAAAGGTGTTTGTCACGTTGCTCTTGCACAAGAGGGCCATTGCAGACCTGGAGAGGTCTTGCTTGGTACAGATTCGCACACCACATCAGCCGGAGCGTTTGGTCAATTTGCTACTGGAATTGGTAACACTGATGCAGCTTTTATATTGGGGACAGGGAAGATCTTACTCAAGGCAAGTGAAAACACATACATATCATCACTTAATCATTTCACACTGATAAGTTTCCTGAATACACTTAAACTGCAGGTGCCTCCAACATTGAGNTTTGTACTGGATGGTGAAATGCCCAACTATTTGCTTGCAAAGGATCTGATTTTGAATATCATTGGCGAGATATCTATGTCTGGTGCAACATACAAAACGATGGAGTTTGTTGGGACTACCATTGAAAGTTTAACTATGGAAGAAAGGATGACACTCTGCAACATGGTTGTAGAAGCTGGAGGAAAAAATGGTATTGTTGCTGCTGATAGGACCACATACAAATACCTTGAGGATAAGACATCTGCACCTTATGAACCAGTTTTTAGTGATGAGAAAGCAAGGCAAGTTCTGTTTCCTCCTCAATTCTCATATATATTTCAAGCCCATTATAGATTTGATGTATCAAAGATGGAACCGTTGGTGGCAAAGCCACATTGCCCTGATAATCATGCTTTGGCAAGAGAATGCAACAATGTGAAAATTGACAGAGTATACATTGGATCATGCACTGGTGGAAAGACTGAAGATTTTATGGCTGCAGCAAAAGTTTTCTTAGCTAGTGGAAAAACTGTGAAAGTTCCAACATTTCTTGTTCCTGCTACACAAAAGGTTTGGATGGACATATANACGCTCGAGGTACCTGGCTCGGGTGGCAAGACCTGTTCAAAGATATTTGAAGAAGCTGGTTGTGATACACCTGCAAGTCCTAGTTGTGCTGCATGTATGGGTGGCCCAAAAGACACATATGGACGCTTGAATAAACCCCAGGTCTGTGTCTCAACAACAAATCGAAATTTCCCTGGTCGGATGGGGCACACGGAAGGCCAGGTATATCTTGCTTCCCCATATACTGCAGCAGCATCTGCGTTAACTGGTTTTGTGACTGATCCAAGGAAGTTCTTGTAATGAGATCGGATGTGTAAAAATCAGTTTCTACCTATAACGGGAAGAATATGAACCGAAGGAATTTATATGCTAGAATTATGTATTGAAGGTCAATTATTTTCATACAAATTAAGCAGCGTTTGAAAGCATAGAGCAATATATTAGTGTGTTGCAACTTGGCAGCAATCCATAGAAGTGTTACAACTTTTAGAAACATTCATGCCAAGATAGATTGCTATACGTGGATGAGGTTCCGTTGAAATTGNCGCGCAACAATACCAGAATGATGAAATGTAGAAGCAATCTTATGGTGGTTCTTCTGCATACGAGCTTCCTGTATCAAGCCAAATTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00266	94696	99461	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01703	leuC	EC:4.2.1.33 4.2.1.35	2-Oxocarboxylic acid metabolism	map01210
			Biosynthesis of amino acids	map01230
			C5-Branched dibasic acid metabolism	map00660
			Valine, leucine and isoleucine biosynthesis	map00290

Gene Ontology

biological_process
GO:0008152 metabolic process

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000266s00012629.1	PF00330.15	Aconitase	68	200	7.40E-16
Glyur000266s00012629.1	PF00330.15	Aconitase	216	356	4.40E-27
Glyur000266s00012629.1	PF00330.15	Aconitase	362	498	1.50E-17

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.824
SRR1783600	control	4.843
SRR1783602	moderate drought stress	2.929
SRR1811619	moderate drought stress	2.902

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.163
DRR006520	Root Summer glycyrrhizin high producing strain	2.295
DRR006521	Root Winter glycyrrhizin high producing strain	17.105
DRR006522	Root Winter glycyrrhizin high producing strain	16.183
DRR006523	Root Summer glycyrrhizin low producing strain	2.690
DRR006524	Root Summer glycyrrhizin low producing strain	2.620
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.000
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.000

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.338
SRR2868004	Drought Stress (root)	1.550
SRR2967015	Control (root)	0.374

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.517
SRR9715740	Leaf	1.136
SRR9715741	Leaf	1.417
SRR9715739	Root	0.050
SRR9715742	Root	44.893
SRR9715743	Root	35.606

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	40.285
SRR8749028	MeJA induced 9h	69.422
SRR8749029	MeJA induced 9h	151.143
SRR8749030	Uninduced	117.828
SRR8749031	Uninduced	249.548
SRR8749032	Uninduced	257.665

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	8.539
SRR8400027	Control - Root	1.922