Gene detail information of Glyur000266s00012626 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G04540.1 | 4.00E-80 | Calcium-dependent lipid-binding (CaLB domain) family protein |
| NR | XP_004495257.1 | 0 | PREDICTED: proteoglycan 4-like [Cicer arietinum] |
| trEMBL | tr|G7I2P8|G7I2P8_MEDTR | 0 | Calcium-dependent lipid-binding (CaLB domain) family protein {ECO:0000313|EMBL:AES60986.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00266 | 92014 | 94086 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000266s00012626.1 | PF00168.25 | C2 | 11 | 82 | 6.50E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.618 |
| SRR1783600 | control | 1.668 |
| SRR1783602 | moderate drought stress | 1.787 |
| SRR1811619 | moderate drought stress | 1.712 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.291 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.438 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.269 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.210 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.047 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.036 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.473 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.291 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.548 |
| SRR2868004 | Drought Stress (root) | 2.173 |
| SRR2967015 | Control (root) | 2.280 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.556 |
| SRR9715740 | Leaf | 3.316 |
| SRR9715741 | Leaf | 1.071 |
| SRR9715739 | Root | 7.336 |
| SRR9715742 | Root | 2.854 |
| SRR9715743 | Root | 3.310 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.271 |
| SRR8749028 | MeJA induced 9h | 1.400 |
| SRR8749029 | MeJA induced 9h | 1.640 |
| SRR8749030 | Uninduced | 0.319 |
| SRR8749031 | Uninduced | 0.322 |
| SRR8749032 | Uninduced | 1.107 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.967 |
| SRR8400027 | Control - Root | 2.833 |