Gene detail

Gene detail information of Glyur000266s00012624

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G04530.1	2.00E-31	Tetratricopeptide repeat (TPR)-like superfamily protein
NR	XP_003556339.2	8.30E-171	PREDICTED: uncharacterized protein LOC100783167 [Glycine max]
COG	YP_004509659.1	2.00E-17	hypothetical protein PGTDC60_0936 [Porphyromonas gingivalis TDC60]
trEMBL	tr\|I1NHZ1\|I1NHZ1_SOYBN	3.00E-171	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA20G34190.1}

Sequence

Transcript Sequence

>Glyur000266s00012624.1
TGCTATTTATTTATTCACTAATGCTATGTACATCTTCTCTCACACCTATAACACACCTCTCACCTCGTTGAGTGGTGGAGTGTCCACTATTATTGCTCTTATTTATTTTATATTGAAAGGTTCTACCCAAAAGATTATGTAAAAGCTTGGACCAGAATGCAGATCAACATGAAACTCTCATTTCCCCCCATCTCAATAACTGTGTCTCTTTCCATAATAGCGTTACCAATATCAAACACAGACCTTGCTTTTTAAGCGCCATACTTGACTCTTATTTCCGCAGTTAACAACAAATCTGGAAGCCACTTAGAGAGATATATTGGCATATCTTGTGACTAACACCGCCCCATGGATGTGTCTCAAAGTCCAAATTCATCATCAGTGGAGGATGAGTTTCATCAGTCAACGTTGTATTCAGCTCCATCATTCGAAATCTACAACAACAGATCTCATGGAGATGATGATGGGGACGACCCAGAAGAGGTTTTGAAGAGAACCGCTTTGATGACTCTACAGAGTTTGGAAGCCAGGGGAAGCGGTGGTGGTGAGTTCAGCTTTGATCAGAGGAGGAAGATGGATTCGATTGAGGAAGGAGAGAATGAGAGTGATTGGTCAACTGGGATTCAGAATCTGAGTGTTGAGGAGGAGGAAGAAGGTGTTGGTGTTGGACCACCTAGTCCACCCATGTATCTGGCAACAGGGCTTGGTGTTGGTGATGAGGTTGTTGTATCTGATAACCGTACTATTACTACCGGTGATGATATATTATTTGCTCACAACTTGCAAGAAAGTGGGGATCTTGAAGAGTATTACAAGAGGATGGTTGATGAGTATCCCTCCCACCCTTTGGTTCTCAAAAAATATGCCCAGCTTTTACAAGGGGAACTTCAAGGGGCTGAGGAGTACTTTCATCGCGCTACTTTAGCAGATCCTAATGATGGTGAAATCTTGATGCACTATGCAAAACTGTTGTGGGAGCAACATCATGACAGAGATAGAGCATTGGTCTATTTTGAACGTGCAGTTCAGGCTGCACCTCAAGACAGCCATGTTCTTGCAGCNTATACTAGTTTTCTCTGGGAAACAGAAGATGATGAGAATGAAGGTGGAAATAATGAAACTCAGATTGACATGGAAAAACAGAAGACCGAACCTGTCAAGCCCTCAAAAGAAGAAAATGATCCAGTTAGATCCGGACAAGAGATTGATGTAGCTAATCTTACAACAGCTGATTGTAGTGAAGACAGTAATGTTGCAGATTATTTGAAGAAGATGATTGATGAAAATCCTAACAATCCTTTGTTTCTGAAAAAGTATGCTCAGTTTCTGTTTCAGTCCAAGAGAGATCTTCAAGCAGCAGAGGATTACTACTCACGAGCAATCTCAGCCGATCCAAGCGATGGTGAAACGATATCAGAATATGCTAGACTAGAGTGGNAACTTCATCATGATCAGGAAAAGGCTTTGCTTTTATTTGAACAAGCAGTTAAAGCTACCCCTGGGGATAGTGCAGTATACATGAGTCTTTTTATATGGCATAATTCTTCTGAATCAGAAAAGAAGTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00266	85494	89240	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006396 RNA processing

cellular_component
GO:0005622 intracellular

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000266s00012624.1	PF13414.1	TPR_11	175	230	5.10E-07
Glyur000266s00012624.1	PF13414.1	TPR_11	316	384	1.60E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	8.094
SRR1783600	control	8.015
SRR1783602	moderate drought stress	10.499
SRR1811619	moderate drought stress	10.596

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	7.405
DRR006520	Root Summer glycyrrhizin high producing strain	6.676
DRR006521	Root Winter glycyrrhizin high producing strain	11.846
DRR006522	Root Winter glycyrrhizin high producing strain	10.841
DRR006523	Root Summer glycyrrhizin low producing strain	6.810
DRR006524	Root Summer glycyrrhizin low producing strain	6.726
DRR006525	Leaf Summer glycyrrhizin high producing strain	21.773
DRR006526	Leaf Summer glycyrrhizin high producing strain	20.902

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	22.588
SRR2868004	Drought Stress (root)	26.624
SRR2967015	Control (root)	27.821

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	31.001
SRR9715740	Leaf	40.879
SRR9715741	Leaf	33.762
SRR9715739	Root	0.426
SRR9715742	Root	3.618
SRR9715743	Root	4.170

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	25.709
SRR8749028	MeJA induced 9h	18.361
SRR8749029	MeJA induced 9h	17.110
SRR8749030	Uninduced	9.821
SRR8749031	Uninduced	8.851
SRR8749032	Uninduced	9.088

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	15.853
SRR8400027	Control - Root	13.779