Gene detail

Gene detail information of Glyur000266s00012620

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G04520.1	2.00E-106	plasmodesmata-located protein 2
NR	KHN30715.1	1.55E-170	Cysteine-rich repeat secretory protein 3 [Glycine soja]
Swissprot	tr\|Q6NM73\|CRR3_ARATH	2.00E-136	Cysteine-rich repeat secretory protein 3 (Precursor)
trEMBL	tr\|I1LCF3\|I1LCF3_SOYBN	1.00E-169	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA10G33410.1}

Sequence

Transcript Sequence

>Glyur000266s00012620.1
CCTAAATAGCTGTTACATTTACACTACTAGGCTATGCATCATTGCAGCCATCCAAAGGAAAGTGAATCCCAAGGGCACAAAAACCAGAACGTAGAGTCACTCACTCCACCACCCCACAGACACCCAAATCCATCCTTTTCCTCCCTCCTGATTCAGCAAAAAGCAGCATAACAAACCCCAAGGCCAAGTGTATCGACCAAAACCTTTGATTCTTTTCCTTAATACTCTACCCTTGTTGCTCTCTGAATCTGATAGCACCCTCCTTGAAGGGCCCTTTTCCCCCCAAAAAACCACCATGATTTGATCCCTCTNTACTCTCAGCACCTTTCACCCCCAAATGGGTTATCCCAGAATGCCCCTCTTCCTTCTTCTGTTCTTGGTTTTCTCCTTCACATCCCAAACAGCTGAATCTGCTCCTGATTACACAACATTGGTCTACAAGGGATGCTCAAAGGAAACATTCACAGATCCAAACGGGGCATACTCACAGGCCCTCTCTGCACTCTTCGGTTCGCTGGTTTCCCAATCCACAAAAGCCAAGTTCTTTAAGGCAACCACAGGCGGTGGCCAAACCAGCATAACGGGTCTGTTCCAATGCAGAGGGGATCTCAGCAATTCCGATTGCTACAACTGTGTTAGCAGGCTCCCAGTTCTCTCCGACAAGCTCTGTGGCAAGACCATAGCCGCAAGGGTTCAGCTCCTAGGTTGTTACATGCTCTACGAGGTTGCTGGTTATGCACAAATCTCCGGGATGCAGATCCTTTACAAGACCTGTGGGGGAACCAATGCTGCTGGGAGAGGGTTTGAGGAGAGAAGGGACACAGCATTCTCGGTTATGGAAAATGGGGTTGTCTCTGGACATGGATTCTATGCTACCAGCTACCAGTCTTTGTATGTGATGGGACAGTGTGAGGGGGATGTTGGTGATTCTGATTGTGGGGAGTGTGTGAAATCTGCTGTTCAGAAGGCTCAGGTTGAGTGTGGGAGCTCTATTTCTGGACAAGTGTATTTGCACAAGTGCTTTGTTAGTTATAGTTATTACCCAAATGGGGTTCCTGGGAAACACTCTTCAGCTGCAGCATCTTCATCCTCTGGCTCGTCTTCTTCATACTCCTCATCTTCTTCTGGGCAAAATACAGGGAAGACTGTGGCTATAATATTAGGAGGGGTAGCTGGGGTGGCGTTTTTGGTTATATGCTCGCTATTTGCTAGGAGTTTGATGAAGAAACATGAAGGTAGATTATTGACAGTAGAAGATGGTTTACTGTGGAGGCAAAATTCGTCTTGCAGAGCAGAGGGTTGTTTCTTTATATATAGCTTTTGGATTGAGAGAGATGGAAGATTTATGGTAAATAGACTTGGCAGATAGGGAAAGAATCTAGGACGGTTCAATGTGGGGACGACTAATTCTTGTAGTTAGGTAAGAAGATTTTGTTGTGAAAACGGTGTAATTAGCTCATGAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00266	69802	71759	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000266s00012620.1	PF01657.12	Stress-antifung	35	129	5.00E-19
Glyur000266s00012620.1	PF01657.12	Stress-antifung	145	235	5.60E-18

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.532
SRR1783600	control	2.530
SRR1783602	moderate drought stress	2.758
SRR1811619	moderate drought stress	2.767

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.997
DRR006520	Root Summer glycyrrhizin high producing strain	6.093
DRR006521	Root Winter glycyrrhizin high producing strain	5.410
DRR006522	Root Winter glycyrrhizin high producing strain	5.200
DRR006523	Root Summer glycyrrhizin low producing strain	9.197
DRR006524	Root Summer glycyrrhizin low producing strain	9.017
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.651
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.598

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	17.875
SRR2868004	Drought Stress (root)	9.057
SRR2967015	Control (root)	10.451

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.788
SRR9715740	Leaf	1.148
SRR9715741	Leaf	1.410
SRR9715739	Root	2.484
SRR9715742	Root	2.426
SRR9715743	Root	2.696

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	47.703
SRR8749028	MeJA induced 9h	14.233
SRR8749029	MeJA induced 9h	28.992
SRR8749030	Uninduced	6.874
SRR8749031	Uninduced	4.425
SRR8749032	Uninduced	8.740

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	6.418
SRR8400027	Control - Root	6.356