Gene detail information of Glyur000266s00012619 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G05590.2 | 2.00E-65 | TLD-domain containing nucleolar protein |
| NR | XP_004501139.1 | 1.58E-161 | PREDICTED: oxidation resistance protein 1-like [Cicer arietinum] |
| trEMBL | tr|I1LCF2|I1LCF2_SOYBN | 7.00E-159 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA10G33400.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00266 | 60865 | 64666 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000266s00012619.1 | PF07534.11 | TLD | 176 | 310 | 5.00E-28 |
| Glyur000266s00012619.2 | PF07534.11 | TLD | 176 | 307 | 5.50E-23 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 13.136 |
| SRR1783600 | control | 12.968 |
| SRR1783602 | moderate drought stress | 10.230 |
| SRR1811619 | moderate drought stress | 9.966 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 10.539 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 9.610 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 25.610 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 24.738 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 10.556 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 10.688 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.343 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.435 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 15.597 |
| SRR2868004 | Drought Stress (root) | 14.222 |
| SRR2967015 | Control (root) | 15.566 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 9.436 |
| SRR9715740 | Leaf | 9.177 |
| SRR9715741 | Leaf | 8.161 |
| SRR9715739 | Root | 3.516 |
| SRR9715742 | Root | 6.252 |
| SRR9715743 | Root | 6.168 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 28.030 |
| SRR8749028 | MeJA induced 9h | 17.744 |
| SRR8749029 | MeJA induced 9h | 32.284 |
| SRR8749030 | Uninduced | 27.829 |
| SRR8749031 | Uninduced | 59.106 |
| SRR8749032 | Uninduced | 50.293 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 21.508 |
| SRR8400027 | Control - Root | 22.495 |