Gene detail

Gene detail information of Glyur000266s00012617.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G04500.1	5.00E-77	CCT motif family protein
NR	XP_007144132.1	0	hypothetical protein PHAVU_007G131300g [Phaseolus vulgaris]
Swissprot	tr\|Q940T9\|COL4_ARATH	1.00E-10	Zinc finger protein CONSTANS-LIKE 4
trEMBL	tr\|V7BI39\|V7BI39_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW16126.1}

Sequence

Transcript Sequence

>Glyur000266s00012617.1
ATGCATTTAGAGATGGAGAAGGGACTCAAGGACAACAGTTCACATTTTTCGGTAGTCATGTTTACATTGCTTTTTTATATGTACCGGCTGCAGGATGAAATTTCAAGCCCTCTTAGTGCTCAAATTTTCGAGCTTTATAACCCTGAATTATTCCCAGTCCCAGAGGCTTTGCCGAATTCTGAGGTTACATCCAGCTCAAACTGTTGCTATGAAGAGAACTCCTCATATGCCACAAACATATCTGTAGCTTTAGAAGTAGAAAATAAGTTCAATAGCAATAGCAACAGCAACAGCAACAATACAGTCACAACTCCAACTAGCACCGCCAACAACACCAACACAACCAACAACAGTAGTAACCTGTCTGTTATATTTGACTCCCAAGAAGACATTGACAATGACATCTCTGCCTCCATAGACTTCTCACTCTCCCCAGCTTTCACTGTTCCCACCACATTCCTCCCAGTCACATCCCAGCAAGAACAGTTTGATTTCTCTTCTGTGCAGCCACATCAGCAGGTTCAGCTAACAGCAGCATGTTCAGCTGTGGAGGCCTTCTCTCAGTACCCCAATCATGACCCTGTTGCACCTCTCATGGGAGCTCCATTGCCACCTGTTTTTGAAGAGGATTGCATCACTTCTGTCCCTTCTTATGTGCCTCTGAACCCTTCATCTCCTTCTTGCACTTACCTCAGCACTGGCATGGCACCATACATGCCTCCTGGGGGACCCCTTACTACTGCCTTGTCTTCTGACAGTTCTGGTTTATTTGGTGGGAACATTCTTCTTGGTTCTGAACTTCAGACACAGGAACTGGAATACCAGGNAGATAATGGTAGAATTTATTGTACAGATTCAATTCAGCGGGTGTTTAACCCTCCAGAACTTCAGCATGCACTTAGTTCTGAAAGTCAGCAACTAGTAGCTGCTGGGAGTGGGAGTTCTGCCACACTGACACCTGAAATCTCAAACTTGGAGGAGTCCACCTTCAAGGTTGGAAAACTTTCTGTTGAGCAAAGGAAAGAAAAGATCCATAGATACATGAAGAAAAGAAATGAAAGAAACTTCAGCAAGAAAATTAAGTATGCCTGCCGCAAAACTCTGGCAGATAGCCGACCTCGGGTTAGAGGAAGGTTTGCAAAGAATGATGACTTTGGAGATACCAATAGAACTGCTAGTAGCAATCATGAAGAAGAAGATGAAGAAGAGGTAGTTGTGAAAGAGGAAGATGATATGGTTGATTCCTCAGATATCTTTGCTCATATCAGTGGGGTGAACTCCTTCAAATGCAACTATTCCATCCAGTCCTGGATTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00266	54698	58207	-

Gene family

Gene family	subfamily
Transcription Factors Family	Orphans

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000266s00012617.1	PF06203.9	CCT	340	383	2.10E-19

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.000
SRR1783600	control	0.000
SRR1783602	moderate drought stress	0.000
SRR1811619	moderate drought stress	0.000

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.140
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.135

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.032
SRR2868004	Drought Stress (root)	0.075
SRR2967015	Control (root)	0.054

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.365
SRR9715740	Leaf	0.485
SRR9715741	Leaf	0.713
SRR9715739	Root	0.000
SRR9715742	Root	0.024
SRR9715743	Root	0.000

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.061
SRR8749029	MeJA induced 9h	0.049
SRR8749030	Uninduced	0.210
SRR8749031	Uninduced	0.390
SRR8749032	Uninduced	0.193

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.104
SRR8400027	Control - Root	0.082