Gene detail information of Glyur000266s00012609 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G33450.1 | 5.00E-47 | Ribosomal L28 family |
| NR | AFK44373.1 | 5.81E-69 | unknown [Medicago truncatula] |
| COG | YP_005070692.1 | 6.00E-27 | 50S ribosomal protein L28 [Arthrospira platensis NIES-39] |
| Swissprot | tr|O22795|RK28_ARATH | 6.00E-59 | 50S ribosomal protein L28, chloroplastic (Precursor) |
| trEMBL | tr|I3SVT1|I3SVT1_MEDTR | 2.00E-69 | Uncharacterized protein {ECO:0000313|EMBL:AFK44373.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00266 | 17937 | 20678 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000266s00012609.1 | PF00830.14 | Ribosomal_L28 | 71 | 131 | 1.60E-22 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 42.899 |
| SRR1783600 | control | 42.967 |
| SRR1783602 | moderate drought stress | 34.644 |
| SRR1811619 | moderate drought stress | 34.725 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 32.663 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 32.073 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 56.241 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 55.460 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 48.062 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 48.987 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 464.111 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 458.213 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 49.416 |
| SRR2868004 | Drought Stress (root) | 44.947 |
| SRR2967015 | Control (root) | 41.754 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 242.791 |
| SRR9715740 | Leaf | 233.739 |
| SRR9715741 | Leaf | 166.734 |
| SRR9715739 | Root | 7.384 |
| SRR9715742 | Root | 15.210 |
| SRR9715743 | Root | 12.968 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 68.599 |
| SRR8749028 | MeJA induced 9h | 28.422 |
| SRR8749029 | MeJA induced 9h | 72.819 |
| SRR8749030 | Uninduced | 36.263 |
| SRR8749031 | Uninduced | 45.535 |
| SRR8749032 | Uninduced | 68.107 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 55.246 |
| SRR8400027 | Control - Root | 54.027 |