Gene detail

Gene detail information of Glyur000266s00012606

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G23510.1	0	Cyclopropane-fatty-acyl-phospholipid synthase
NR	XP_004495453.1	0	PREDICTED: uncharacterized protein LOC101501999 [Cicer arietinum]
COG	YP_003158931.1	5.00E-88	cyclopropane-fatty-acyl-phospholipid synthase [Desulfomicrobium baculatum DSM 4028]
trEMBL	tr\|A0A072VM29\|A0A072VM29_MEDTR	0	Cyclopropane-fatty-acyl-phospholipid synthase {ECO:0000313\|EMBL:KEH42686.1}

Sequence

Transcript Sequence

>Glyur000266s00012606.1
AGAGTAAACAANGTAAGATGCTAAATGCAAAATTATTCCTTGATTTGTATTGGCAGTGATATTTTTCTTCATCGTGATAAAAATTTAATGCCCCAAAACCCAGCAGCATGGAGTGCATGGAATTTTCTTNGAAATAACAACAACAGAGTTTGTTTGACATACTGGCTAAATATTCTTCAGAATATTGAAGAAGCAAATGAACCCTTCCTTGTAACTCTGAATCCAGATCATATACCAGAAAATACCTTGCTTAAGTGGTCAACTGGCNATCCAATCCCATCAGTTGCTGCATTCAAAGCTTCACAAGAGCTAGACCATATTCAAGGGAAAAGAAGAATCTGGTTTTCTGGGGCCTACCAAGGTTATGGATTTCATGAAGATGGATTGAAGGCTGGCATGATTGCAGCTAATGGCATTCTTGGAAGATGTTGTGCCCTTCTTACCAATCCAAAACACACGGTACCTTCTTGGAAGGAACTGGGGGCACGTCTTTTTGTGACTAGATTCCTGAGTTACTATATCACTACCGGTAGCTTAACCTTATTGGAGGAAGGAGGAACAATGTTTACCTTTGAGGGAACTGAGAAAAAGTGTATTCTGAAGAGTGTTTTGAGAGTCCACAATCCCCAGTTTTATTGGAAGGTCATGACAGAGTCAGATTTAGGCCTTGCAGATGCATATATCAATGGGGACTTTTCATTTGTTGATAAAGATGAAGGTCTCTTGAATCTTTTTTTGGTTCTCATAGCCAACAGAGATTTAAATGCATCCAACTCAAAATTGAAGAAGAATAGGGGTTGGTGGACACCACTTTTATTTACGTCTGCTTTGGCATCTGCAAAGTTCTTCATGAAGCATNTCTCAAGGAAAAATACTCTCACACNGGCTCGTAGGAACATTTCTAGGCATTATGATCTGAGTAATGAACTCTTTGCACTTTTCTTGGATGAAACTATGACATATTCGTGTGCAAATAAAGATGAAGACTTGAAAGATGCACAAATGAGGAAAATATCTCTCCTAATTGAAAAAGNTAGAATAGAGAGAAAACATGAAATTCTTGAGATTGGATGTGGATGGGGAAGTTTAGCCATTGAGGTTGTCAAACAAACTGGTTGTAAATACACTGGTATCACTTTGTCTAAGGAGCAACTGGACCTTGCAGAAAAAAAAGTCAAAGATGCTGGGCTTCAGGACCATATCAACTTTATTCTTGGAATGATAGAACATGTTGGCCATGGATACCATGAAGAATTCTTTGGTTGTTGTGAATCGGTATTGGCAGATGATGGACTACTTGTTCTCCAGTTCATATCAATCCCGGATGAGCAGTATGACGAGTACAGGCGCAGTTCTGATTTTATAAAGGAATATATTTTTCCTGGAGGTTGCCTACCCTCTCTAAGTAGGATAACATCAGCCATGGCAGCCACATCCAGACTCTGCGTGGAGCACATTGAAAACATAGGAATTCATTACTATCAAACACTAAGATGGTGGAGAAAAAACTTCATGGAAAGGCAGAGTGAAATTTTGGCTCTTGGATTCAATGAAAAATTCATCAGAACTTGGGAATACTATTTTGATTATTGTGGTGCTGGTTTCAAGTCACGCACACTTGGGGACTATCAGGTGGTTTTCTCACGCCCAGGTAACGTTACTGCATTCAGCGATCCATACAAAAGATGGCCCTAATTAAGCATGTCGATTTATCTTTCACGGGAGACCACANGCCCCATCACGCATTCTAGCATGCATATAAATAAATTGACGTGTTGNTGTCATGTAACTCATTTCTTGATAATCCCAAAATTTCTCTGTTGTCACCGTTTATCTCTTGAACATCGTTGAATTAGAGGAGCTGATTGTGCTGTTTCGCAGTGGCGAAAAGATGAATGGTGCTGTTTGATGTATGTATGTATGTATGTATGTTATGTATGTATGTATGACACTTTTCCATTGCTTTACCAATAAAAAAGCTCCAACTGCTTTAATTTCGAGTGTACTTTTTTAACTTTCC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00266	1619	9154	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0008610 lipid biosynthetic process

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000266s00012606.1	PF02353.15	CMAS	286	532	4.60E-66
Glyur000266s00012606.2	PF02353.15	CMAS	286	393	5.60E-33
Glyur000266s00012606.2	PF02353.15	CMAS	435	532	3.50E-22

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.444
SRR1783600	control	1.442
SRR1783602	moderate drought stress	2.135
SRR1811619	moderate drought stress	2.138

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.474
DRR006520	Root Summer glycyrrhizin high producing strain	0.546
DRR006521	Root Winter glycyrrhizin high producing strain	0.262
DRR006522	Root Winter glycyrrhizin high producing strain	0.149
DRR006523	Root Summer glycyrrhizin low producing strain	0.168
DRR006524	Root Summer glycyrrhizin low producing strain	0.168
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.193
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.070

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	6.999
SRR2868004	Drought Stress (root)	6.346
SRR2967015	Control (root)	4.403

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	5.906
SRR9715740	Leaf	6.156
SRR9715741	Leaf	6.843
SRR9715739	Root	0.250
SRR9715742	Root	1.143
SRR9715743	Root	0.841

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.192
SRR8749028	MeJA induced 9h	0.112
SRR8749029	MeJA induced 9h	0.235
SRR8749030	Uninduced	0.060
SRR8749031	Uninduced	0.099
SRR8749032	Uninduced	0.042

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.449
SRR8400027	Control - Root	3.142