Gene detail

Gene detail information of Glyur000265s00020632

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G34930.1	1.00E-52	disease resistance family protein / LRR family protein
NR	XP_004507279.1	1.43E-170	PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710-like [Cicer arietinum]
COG	YP_001192956.1	2.00E-36	two component regulator [Flavobacterium johnsoniae UW101]
Swissprot	tr\|Q42371\|ERECT_ARATH	5.00E-42	LRR receptor-like serine/threonine-protein kinase ERECTA {ECO:0000303\|PubMed:8624444} (Precursor)
trEMBL	tr\|A0A072U606\|A0A072U606_MEDTR	3.00E-165	LRR receptor-like kinase family protein {ECO:0000313\|EMBL:KEH25184.1}

Sequence

Transcript Sequence

>Glyur000265s00020632.1
ATGTTTCGCTGTGTGTTCAGTTTTCTGTTTTTGTGCATCTGTTGTTTAAGTGCTGGAAGTTCCCATGCTATCAACAGGTGTGCGGAGACAGAGAGGCAAGCTCTCCTCAAGTTTAAAGCTTCTCTCATTCCTTCTGTCGATCCTCAAAGGCACGCTCTAACCTCATGGAAGGGTGCAGATTGTTGCAAATGGGAAGGAATTTCATGTGATAATATAACTGGTCATGTCACCAGTTTGAATCTCACTGCTCAATATTTGGGAGGTAAGATAAATCCTTCATTATGTGAACTGCAACGTCTAACTTCTTTAGATCTCAGTGATAATCGTTTAGAAGGAAAGATCCCAAGGTGCATTGGCTCACTCGGTCAGTTGATAGAGTTGAATCTTAATAATGATGAACTTGTTGGCGTCATTCCTCCTACTGTGGGGAACCTTTCCAATTTGCAAACTCTTGACCTTGGGTTGAATCATTTGGCTGCAAATGACCTTCAATGGCTTTCTCACCTTTCCAATTTGAGACACCTTGATTTGTCATCTATCAATCTTAGTCGAGCCGTTGGTTGGCCATCATCAATCACCAAAATCCCTTCTCTATCAGAGCTTTATTTATATGACTGTGGGCTCCGTCAAGTCAACCCTAAATCATTTCTCCACCTGAATTCTTCAACTTCCCTCAAATACCTCGATCTTTCAGGAAATGAGTTAGACTCTTCAATTCTGCCGTGGGTGCTTAATGTTAGCAAAGTCCTCACATATCTTGCTCTCTCATATAATTCCCTGCACTGTATTCCAGATGGCCTTGGGAACATGACTTCTCTTCAACATCTTGATCTCTCACATAATGAACTGGAGGGTAGCATACTAGAATCCTTCAAGAGTTTGTATCAACTTAAAGAGTTACATCTGGATTCCAACAAATTGTCTGGCAAACTCAGTGACAGCATGCAACAATTGTGTTGTGCACAAAATGGTTTAAAGGGGTTGAGTCTAGGTGATAATCCATTCAGTAGTGGGTCACTTCCTGATTTTTCATGCTTTTCATCCTTGGAGACATTAAGTTTTCAAAATACCAATGTTGGTGGGNCCTTACCACCATCNTTTGGTTACCTACCTTATCTAGAATCCTTAGATCTCAGTTTTAACCAATTGAGCGGATCACTTCCATATAATATTGGCCAACTTTCTAGTCTTAGAAGGTTGTTTCTCTCTTCAAATAAGCTAAATGGTGTCATTGGCGAAGCACATCTATCAAACCTATCTAGATTGATAATTCTAGATGTGGCTGAAAATTCACTTTCGCTCAACTTGAGTTCAAATTGGGTTCCACCTTTCCAACTGTATGCATTATATGCATCATCGTGCACAGTGGGACCAAAATTCCCAATATGGCTCAAACATCTTCAGGAACTTGAGGACCTAGAAATATCTAATAGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00265	222561	223994	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000265s00020632.1	PF08263.7	LRRNT_2	29	70	1.40E-11
Glyur000265s00020632.1	PF13855.1	LRR_8	99	158	5.00E-07
Glyur000265s00020632.1	PF13855.1	LRR_8	223	283	8.10E-10
Glyur000265s00020632.1	PF12799.2	LRR_4	348	384	2.30E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.124
SRR1783600	control	0.132
SRR1783602	moderate drought stress	0.132
SRR1811619	moderate drought stress	0.145

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.403
DRR006520	Root Summer glycyrrhizin high producing strain	0.187
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.720
DRR006524	Root Summer glycyrrhizin low producing strain	0.863
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.465
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.465

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.657
SRR2868004	Drought Stress (root)	8.575
SRR2967015	Control (root)	5.653

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.307
SRR9715740	Leaf	0.065
SRR9715741	Leaf	0.033
SRR9715739	Root	0.514
SRR9715742	Root	0.884
SRR9715743	Root	0.573

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.103
SRR8749028	MeJA induced 9h	0.023
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.608
SRR8400027	Control - Root	4.988