Gene detail

Gene detail information of Glyur000265s00020626

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G34930.1	3.00E-52	disease resistance family protein / LRR family protein
NR	KEH16826.1	0	LRR receptor-like kinase [Medicago truncatula]
COG	YP_004775215.1	4.00E-32	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
Swissprot	tr\|C0LGF5\|Y1341_ARATH	2.00E-48	Probable LRR receptor-like serine/threonine-protein kinase At1g34110 (Precursor)
trEMBL	tr\|A0A072THX8\|A0A072THX8_MEDTR	0	LRR receptor-like kinase {ECO:0000313\|EMBL:KEH16826.1}

Sequence

Transcript Sequence

>Glyur000265s00020626.1
TCACAATTCAGTTGACACAGACACATACTATCTTCCATATATTTTAATAATAATATCCCAAAAAAAACTCTCCCATGGGAGTTGAGTCCATCACAATGTTTCGTTGTGGGTTCAGTTTTCTGTTTTGGTGCATCTGTTGTTTATGTGCTGGAAGTTCCCATGCTATCAACAAGTGTGCGGAGACAGAGAGGCAAGCTCTCCTCAAGTTTAAAGCTACTCTCATTCCTTCTGTGGATCCTGAATATCATGCTCTAACCTCATGGAAGGGTGCAGATTGTTGCAAATGGGAAGGAATTTCATGTGATAATATAACTGGTCATGTCACCAGTTTGAATCTCACTGGTCAATTACAGAGAGGTGATAATCCATTCAGTAGTGGGTCACTTCCTGATTTTTCATGCTTTTCATCCTTGGAGACATTAAGTTTTCAAAATACCAATGTTGGTGGGNCCTTACCACCATCNTTTGGTTACCTACCTTATCTAGAATCCTTAGATCTCAGTTTTAACCAATTGAGCGGATCACTTCCATATAATATTGGCCAACTTTCTAGTCTTAGAAGGTTGTTTCTCTCTTCAAATAAGCTAAATGGTGTCATTGGTGAAGCACATCTATCAAACCTATCTAGATTGATAATTCTAGATGTGGCTGAAAATTCACTTTCGCTCAACTTGAGTTCAAATTGGGTTCCACCTTTCCAACTGTATGCATTATATGCATCATCGTGCACAGTGGGACCAAAATTCCCAATATGGCTCAAACATCTTCAGGAACTTGAGGACCTAGAAATATCTAATAGTGAACTACTTGGCCTATTTCTCTCGAATAATATGTTCTCAGGACCCCTAGCATCTTTTTGTACATCCTCACCACTATATTTAACTTATCTTGACCTGTCTAGAAAAATACCCAACTCATTTGGCACTTTACGACAAATTGAGTCGATCCATTTAAATAATAACAACTTCTCTGGTAAAATTCCATCTTTCACCCTGTGTAATAGCTTGAAGTTAATTGATATTGGTGATAACAATCTGGAAGGAACATTACCGGTATGGGTAGGTCAATATCTACATCAGTTGATTGTTTTGCGTCTGCAAGAAAATAAGTTCGAAGGAAACATCCCTGCAAATCTGTGTAATCTATCACTTCTTCAAGTATTGGATCTCTCTAAAAACAATATTACAGGGGAAATACCACAATGCTTCNATCACATAATNGCTTTATCAAATACAAAGTTTCCAAGAAAAACCATGTCCTATTTCTCAGTCATATCTTTCGTTGATAACAATGAGCATGATATTGGCTACTTCGACGACAAAGCAATATTGGCATGGAAAGGAGCAAATAGAGAATATGGGAAAAATCTTGGATTCATGACGGCCATTGATCTTTCTTGCAATCACTTAACGGGAGAGATACCCCAAAGCATAACAAAACTTGTGGCATTAGCTGGTCTAAATCTTTCAATGAATAATTTCACAGGATTCATTCCATACAACATTGGTGATATGGAAATGTTGGAATCACTCGACTTGTCAAGAAACCATCTTTATGGTAGAATGCCAACAAGCTTTTCAAATTTGACTTTTCTCAGTCACATGAACTTGTCTTTTAACAACTTATCAGGGAAAATTCCAGTGAGCACTCAACTGCAAACTTTTGATCCCTTTACATTTGTGGGGAACAATGGTCTTTGTGGCCCACCACTCACAGACCACTGCCCAGGGGATGTGATTTCGCCAACTGGAAACCCTGACAAACATGTGACTAATGAAAATGAAGATGAAGATGAGCTCATAAGCTTTGGGTTTTTCGTCAGCCTTGGGCTTGGATTTTTTGTTGGATTTTGGGGAGTATGTGGAACTTTAGTTATAAAAACTTCTTGGAAGCATGCCTACTTTCGATGCTTTAGCAATATGAGTGATTGGATACATGTGACAATAGTGAATGAAAAGGAGATTCCGAGTCCAAGAGTGACAGGTAAAGCTTTATTTGAGATGGTGATACGCTGCATAGTCTTCGTCAATATTATAGAGAGTTCAATGTGTGTGGAGATAGAAAGGCAAGCTCTACTCAAATTAAAAGATGGTTTCATTAATGGAAGGGATATTCTTACTTCATGGAACGGTGAAGATTGTTGCAAATGGAAAGGAATTTCGTGTGATAATTTAACTGGTCATGTAACCAGTTTGGAGATTAAAACAACCAGTTATCTTCAAAAACTGAAAGGAAAGATCCCAAGGTGCATTGGTTCACTTGGTCGGTTGATGGAGTTGAATCTTGCAGCTAATGAACTTGTTAGTGCCATTCCTCCTTCTCTAGGGAACCTTTCCAATTTGCAAACTCTTGACCTTAGGTATAATATTCATTTGGCTGTAAATGACCTTGAATGGCTTTCTCGCCTTTCTATTTTGAGATACCTTGGTCTCTCATCTGTGAATCTTAGTCGAGCCGTTGACTGGCCATTGTCAATAACCAAAATCCCTTCTCTATCAAAGCTTTATTTAAATAACTGTGGGCTCCATCAAGTCAATCCTGAAATTATCCCCCACCTGAATTCTTCAACTTCCCTCAAATACCTCGATCTTTCAGGAAATAATTTAAACTCTTCAATTCTGCCATGGGTGGTTAATGTTAGCAAAGTCCTCACATATCTTGATCTCTCATCTAATTCCCTGCACAGTATTCCAGATGGCCTTGGGAACATGACTTCTCTTCAACATCTTGATCTCTCATATAATGAACTTGAGGGTAGCATACCAAAATCCTTCAAGAGTTTGTGTCAACTTAAAGAGTTACGTCTATATACCAACAAATTGTCTAGCAAACTAAGTGACAGCATACAACAATTGTGTTGTGCACAAAATGGTTTAGTGTGGTTGGATATGACAGATAACCCATTCAACAGTGGGTCACTTCCTGACTTTTCATGCTTTTCATCCTTGGAGACATTAATTCTTCGAAATACCAATGTTGTTGGGTCATTATCACCATCATTTGGTCACTTGTCATCTCTAAGAGAACTAGATCTTTCCCCTAATCACTTGAATGGTGTGGATATCATTAGTGAAACACATCTATCAAATCTATCGATTCTAGATCTCAGTTTTAACCAACTGAGCGGATTACTGCAATTATTTGAGGTAGCTAAACTTGCCACTTTAGAAGAACTGGATCTTTCCCACAATCAGTTGAATGGATCACTTCCACATGTTTTTGGCCAATTTTCTAGTCTTAGAAAGTTGTTTCTCTCTTCAAATAAGTTGAATGGTGTCATTGGTGAAGCACATCTATCAAACCTATCCAGATTGGTATACTTGGTTGTGTCTGAAAATTCACTTTTATTCAAATTGAGTTCAAATTGGGTTCCTCCTTTCCAACTGATTGAATTACATGCATCATCGTGCATTTTGGGTCCAAAGTTTCCAAAATGGCTCAAACATCAAAGAAAACTTTGGCAGCTGCAAATCTCTAACAGCAGTATTTCAGGTTCATTTCCTAAATGGTTTTGGAACCTATCTTCAAGCTTGACATACTTGAATGTTTCACATAATGAACCTAGTGGAGTCTTACCAAAATCATTACCAAGTTCGAAGGCAAACAACCCA

Protein Sequence

>Glyur000265s00020626.1
MGVESITMFRCGFSFLFWCICCLCAGSSHAINKCAETERQALLKFKATLIPSVDPEYHALTSWKGADCCKWEGISCDNITGHVTSLNLTGQLQRGDNPFSSGSLPDFSCFSSLETLSFQNTNVGGXLPPSFGYLPYLESLDLSFNQLSGSLPYNIGQLSSLRRLFLSSNKLNGVIGEAHLSNLSRLIILDVAENSLSLNLSSNWVPPFQLYALYASSCTVGPKFPIWLKHLQELEDLEISNSELLGLFLSNNMFSGPLASFCTSSPLYLTYLDLSRKIPNSFGTLRQIESIHLNNNNFSGKIPSFTLCNSLKLIDIGDNNLEGTLPVWVGQYLHQLIVLRLQENKFEGNIPANLCNLSLLQVLDLSKNNITGEIPQCFXHIXALSNTKFPRKTMSYFSVISFVDNNEHDIGYFDDKAILAWKGANREYGKNLGFMTAIDLSCNHLTGEIPQSITKLVALAGLNLSMNNFTGFIPYNIGDMEMLESLDLSRNHLYGRMPTSFSNLTFLSHMNLSFNNLSGKIPVSTQLQTFDPFTFVGNNGLCGPPLTDHCPGDVISPTGNPDKHVTNENEDEDELISFGFFVSLGLGFFVGFWGVCGTLVIKTSWKHAYFRCFSNMSDWIHVTIVNEKEIPSPRVTGKALFEMVIRCIVFVNIIESSMCVEIERQALLKLKDGFINGRDILTSWNGEDCCKWKGISCDNLTGHVTSLEIKTTSYLQKLKGKIPRCIGSLGRLMELNLAANELVSAIPPSLGNLSNLQTLDLRYNIHLAVNDLEWLSRLSILRYLGLSSVNLSRAVDWPLSITKIPSLSKLYLNNCGLHQVNPEIIPHLNSSTSLKYLDLSGNNLNSSILPWVVNVSKVLTYLDLSSNSLHSIPDGLGNMTSLQHLDLSYNELEGSIPKSFKSLCQLKELRLYTNKLSSKLSDSIQQLCCAQNGLVWLDMTDNPFNSGSLPDFSCFSSLETLILRNTNVVGSLSPSFGHLSSLRELDLSPNHLNGVDIISETHLSNLSILDLSFNQLSGLLQLFEVAKLATLEELDLSHNQLNGSLPHVFGQFSSLRKLFLSSNKLNGVIGEAHLSNLSRLVYLVVSENSLLFKLSSNWVPPFQLIELHASSCILGPKFPKWLKHQRKLWQLQISNSSISGSFPKWFWNLSSSLTYLNVSHNEPSGVLPKSLPSSKANNP

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00265	166711	179515	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000265s00020626.1	PF08263.7	LRRNT_2	36	77	3.50E-10
Glyur000265s00020626.1	PF00560.28	LRR_1	137	158	0.12
Glyur000265s00020626.1	PF00560.28	LRR_1	360	379	0.13
Glyur000265s00020626.1	PF00560.28	LRR_1	483	504	0.74
Glyur000265s00020626.1	PF08263.7	LRRNT_2	663	698	8.80E-11
Glyur000265s00020626.1	PF13855.1	LRR_8	731	788	2.50E-06
Glyur000265s00020626.1	PF13504.1	LRR_7	805	820	3.1
Glyur000265s00020626.1	PF00560.28	LRR_1	833	849	0.14
Glyur000265s00020626.1	PF13855.1	LRR_8	859	916	4.00E-10
Glyur000265s00020626.1	PF13855.1	LRR_8	1030	1090	1.20E-07
Glyur000265s00020626.2	PF08263.7	LRRNT_2	36	77	1.70E-10
Glyur000265s00020626.2	PF08263.7	LRRNT_2	121	156	4.30E-11
Glyur000265s00020626.2	PF13855.1	LRR_8	189	246	2.30E-06
Glyur000265s00020626.2	PF13504.1	LRR_7	263	278	1.5
Glyur000265s00020626.2	PF00560.28	LRR_1	291	307	0.07
Glyur000265s00020626.2	PF13855.1	LRR_8	317	374	2.40E-10
Glyur000265s00020626.2	PF13855.1	LRR_8	414	474	2.50E-06
Glyur000265s00020626.2	PF13855.1	LRR_8	488	548	2.60E-08

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.149
SRR1783600	control	0.134
SRR1783602	moderate drought stress	0.207
SRR1811619	moderate drought stress	0.166

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.457
DRR006520	Root Summer glycyrrhizin high producing strain	1.523
DRR006521	Root Winter glycyrrhizin high producing strain	0.044
DRR006522	Root Winter glycyrrhizin high producing strain	0.109
DRR006523	Root Summer glycyrrhizin low producing strain	2.266
DRR006524	Root Summer glycyrrhizin low producing strain	2.250
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.637
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.621

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.838
SRR2868004	Drought Stress (root)	18.083
SRR2967015	Control (root)	9.421

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.213
SRR9715740	Leaf	0.000
SRR9715741	Leaf	0.055
SRR9715739	Root	0.453
SRR9715742	Root	0.444
SRR9715743	Root	0.412

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.037
SRR8749028	MeJA induced 9h	0.019
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.053
SRR8749032	Uninduced	0.087

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.417
SRR8400027	Control - Root	2.270