Gene detail

Gene detail information of Glyur000265s00020623

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G34930.1	3.00E-69	disease resistance family protein / LRR family protein
NR	KEH25182.1	0	LRR receptor-like kinase family protein [Medicago truncatula]
COG	YP_004775215.1	5.00E-32	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
Swissprot	tr\|Q9C9H7\|RLP12_ARATH	3.00E-83	Receptor-like protein 12 (Precursor)
trEMBL	tr\|A0A072U675\|A0A072U675_MEDTR	0	LRR receptor-like kinase family protein {ECO:0000313\|EMBL:KEH25182.1}

Sequence

Transcript Sequence

>Glyur000265s00020623.1
ATGTTTCGGTGTGGGTTCAATTTTCTCTTCTGTGCAGTGGGCATAATTCTATGCATGATGATCTGTTTTTGCATGGCAAGTTTCCATACAAACAAGTGTGTGGAGACAGAGAGGCAAGCTCTCCTCAAGTTGAAAGACGGCTTCATTTATGGAAGGGTGGTTCTTTCCACGTGGAACGGCAAAGACTGTTGCAAATGGGGTGGCATTTCATGTGATAATGATACTGGCCATGTGACCAGTTTGGATGTTGAAGCTACACATCTTACTGAACCATTGCGAGGTAAGTTAGATTCTTCTATATGTGTACTGCATCATCTGACATCCTTAGATCTCGGTTACAATGAATTAGAAGGAAAGATCCCAAAGTGCATCGGCTCACTGCATCAATTGATAGAGTTGCATCTTAACCTTAATGCATTTGTTGGTGCCATTCCCCCTACTCTTGGGAACCTTTCCAATTTGCAAACTCTTGACCTTGGGTCTAATGATCATTTGGTTGCAAATGACCTTGAATGGCTCTCTCACCTTTCTAATTTGAGATCTCTTGATCTATCAAAAGTGAATCTTAGCCGAGCCGTTGATTGGCTATCATCAATAACCAAGATCCCTTCTCTATTGGAGCTTTATTTATTTGACTGTGGGCTCCCGCAAGTCAATCCTGACTCTATGCCCCACTTGAATTCTTCCACTCCTCTCAAAACCCTTAATCTTCGAGAAAATAATCTAAACTCTTCAACTTTGTCATGGCTGCTTAATGCTAGCAGAGCCCTCACAGATCTTGATATCTCAAATATTGAACTTGAGGGTAGCATACTAAAATCTATTTGGAGTTTGTGTCAACTAAAAGTTTTATGGTTGAATTCCAACAAATTGTCTGGCCAACTCGGTGACTACTACATGCAGCAACTATTTTGTGCCCAAAATAATTTAGAGGAGTTGGATCTCAGTGATAACCCATTCAGTAGTGGGCCACTTCTTAACTTTTCATGGCTTTCATCCTTGAGGACATTAACTCTTCGAAATACCAATATTGTTGGGCCATTACCACAATCATTTGGTCACTTGCCTTATCTTACAAGTTTGGATCTCAGCTTTAACCAGTTGAACGGATCACTGCCTTTGTTTGAGGTTACTAAACTTGCCTCTTTAGAAGAATTGGATCTTTCCCATAATAAGTTGACTGGATCACTTCCATATATTATTGGCCAGCTTTCCAGTCTTAGGTTGTTGTTTCTCTCTTCAAATAAGTTGAATGGTCTCATTAGTGAAGCACATCTATCAAACCTATCTAGATTGGAAATTCTGGATGTGGCTGAAAATTCACTTTCGTTCAACTTGAGTTCAAATTGGGTTCCCCCTTTTCGACTACATCTATTTGGTTTATTTCTCTCAAATAATATGTTCTCGGGCTCTCTATGTTCATTTTGTGCATCCTCAACATTGTCTTTAACTTATCTTCACTTGTCCACTAACTTACTAGTAGGGCCACTTCCGGATTGTTGGGAGAAATTTCAGCGGTTACAAGTTTTGAATTTGGCAAACAACAATTTATCAGAGAAAGTACCGAACTCAATTGGCACTTTACGAGAAATTGAGTCCATCCATTTAAATAACAACAACTTCTCTGGTGAAATTCCATCTCTAACCCTCTGTACCAACTTGATAGTAATTGATATTGGCAATAATAATCTCCAAGGAACATTACCAGTGTGGATAGGTCATCACCTGCATCAGTTAATTGTTTTACGTCTACAAGCAAATAAGTTTCAAGGAAACATCCCTGCAAGTCTGTGCAATCTATCATTTCTTCAAGTATTGGATCTCTCTAAAAACAATATTATAGGGGAAATACCACAATGCTTCAGTCACATAACTGCCTTATCAAATATCAATTTTACAAGAAAAGCCATTTTCTATTTCAAATTCTATATTGTCTATATGAGGAATAAATATGTAATTGGCGCCTCCGGTGATGAAGCAATATTGGCATGGAAAGGAGCAAATAGAGAATATGGGAAAAATCTTGGATTGATGACAGCCATTGATCTTTCTTGCAACCACTTAACAGGAGAGATACCCCAAAGCATAGCAAAACTTGTGGCATTAGCTNGCTTAAATCTTTCATGGAATAATCTCACAGGATTTATTCCGGACAACATTGGTGATATGAAAATGTTGGAATCACTGGACTTGTCCAGAAACCATCTTTATGGTAGAATGCCAACAAGCTTTTCGAATTTGACTTTTCTCAGCTACATGAACTTGTCATTCAACAACTTATCAGGGAAAATTCCAGTGAGCACTCAACTACAATCTTTTGATCCCTCTACATATGTGGGGAATAGTGGTCTTTGTGGCCCACCACTCACAGACCACTGCCCAGGAGATGTGATTTCGCCAACTGGAAACCCAGACAAACATGTAACTAATGAAAACGAAAATGATGAGATCATAACCTCTGGGTTTTATGTTAGCCTGGGGCTCGGATTTTTTGTTGGATTTTGGGGAGTTTGTGGAACTTTAGTTATAAAAACCTCTTGGAGGCATGCCTATTTTCAGTTCTTTAACAACATGAGTGATTGGANGCATGTGACACTTGTGGTTTTTACAACCAGAATGAAGCGGAGATTTCGAGTCCAAGACTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00265	150069	152993	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000265s00020623.1	PF08263.7	LRRNT_2	36	72	1.70E-09
Glyur000265s00020623.1	PF13516.1	LRR_6	103	125	0.38
Glyur000265s00020623.1	PF00560.28	LRR_1	309	324	0.42
Glyur000265s00020623.1	PF13855.1	LRR_8	332	393	9.70E-08
Glyur000265s00020623.1	PF00560.28	LRR_1	506	527	0.091
Glyur000265s00020623.1	PF00560.28	LRR_1	603	623	0.46
Glyur000265s00020623.1	PF00560.28	LRR_1	726	747	0.53

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.725
SRR1783600	control	5.922
SRR1783602	moderate drought stress	9.074
SRR1811619	moderate drought stress	8.831

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.704
DRR006520	Root Summer glycyrrhizin high producing strain	1.367
DRR006521	Root Winter glycyrrhizin high producing strain	1.557
DRR006522	Root Winter glycyrrhizin high producing strain	1.568
DRR006523	Root Summer glycyrrhizin low producing strain	0.392
DRR006524	Root Summer glycyrrhizin low producing strain	0.376
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.469
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.508

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.833
SRR2868004	Drought Stress (root)	10.705
SRR2967015	Control (root)	5.307

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.234
SRR9715740	Leaf	0.215
SRR9715741	Leaf	0.731
SRR9715739	Root	9.586
SRR9715742	Root	27.569
SRR9715743	Root	24.408

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.173
SRR8749028	MeJA induced 9h	1.187
SRR8749029	MeJA induced 9h	0.230
SRR8749030	Uninduced	0.338
SRR8749031	Uninduced	0.014
SRR8749032	Uninduced	0.032

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	13.516
SRR8400027	Control - Root	21.250