Gene detail

Gene detail information of Glyur000265s00020609

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G15780.1	2.00E-35	Pollen Ole e 1 allergen and extensin family protein
NR	AFK48758.1	1.20E-78	unknown [Lotus japonicus]
trEMBL	tr\|I3T8B6\|I3T8B6_LOTJA	4.00E-79	Uncharacterized protein {ECO:0000313\|EMBL:AFK48758.1}

Sequence

Transcript Sequence

>Glyur000265s00020609.1
GTAAAAAAGAAGGCGGCATTGCNTTAACAGTGTGTCACATATATATATAAAGACCCTCATTTTTTATTTGGAAGCAAAACACCAATTTGCCTTCACTGATAGAAAAAAACAAACCTCAGAATGTCTTGGTTCCTTGTAATTCTGTTTCTCAGTCTCACATCTGGTAGCATTAGTCTATCAGAGGCTAGCCATGACAATAACAAGAAGCTTCTTCCTTCAGCTGTTGCTGTTGGCACTGTCTACTGTGACACATGTTTTCAACAGGCTTTCTCTATAGGAAGCCACTTCATTTCAGGTGCATCAGTAGCTGTGGAATGTAAAGTTGGGGATTCAAAACCAAGATTCTACAAAGAAGTGAAGACAAATGAGCATGGGGAATTCAAAGTGAAGCTACCTTTCTCAGTGAGGAAACATGTGAAAAGAATCAAAGGGTGTAGTTTCAAATTGATGAGTAGCAATGAACCTCACTGTGCTGTGGCCTCAGCTTCTGCTGCTGCTACTACATCACTAAGACTCAAGAAAAAATTGCAAGGAGAACACATATTCTCAGCTGGTATTTTCTCATTCAAGCCTATAAAAAAGCCAAAACTATGTGACCAAAAACATGGTATTCCAAACTCAAAGGGACAACGTGGGTATGTGAAAAATTCAGAAAAATCTCAGCTTTTTTCAGATAAGAAAAAAATAGTACCTGACCCTGAAGATTTTTTCTTTTTTCCTCCAATCCCATTTCTACCACCACCTATTTTCCCCAACCCATTTCAGCCACCNCCATTAATCCCTAACCCATTTCAGCCACCTCCTTTGATTCCTAACCCATTTCAACCACCAAGCCCACCACTTATCCCAAACCCATTCCAGCCACCAAGCCCACCACCACTTTTTCCAAATCCATTTCAGCCACCACCAAGCCCAACACCACTTTTTCCTAACCCATTTCAGCCACCACCAAGCCCACCAGCACCACTCATCCCTAACCCATTTCAACCACCACCAAGCCCAACACCAACACCACTGATCCCAAACCCATTTCAACCACCACCAAGCCCAACACCAACACCACTCATCCCTAACCCATTTCAGCCACCCCAGCCACCCCCATCAAGGCCACCACCCTTATTTCCATTCCCACCAATAGTGATACCAGGTTTAACTCCATCACCACCACCTCCACCACCACCACCACCACCAATTTTCCCCTTTCCTTTCCCTCCACTATTCCCTCCATTATTCCCTCCACCTCACATCCCTGGCTCACCCCCTACTTCTTCAAAGATCAATTCTTCTCCTTGATTAAATACTATAGATTATATCAAAGTACATTCATTTGCTTTCTTTATGATATAATTACCCCAAACATGGGGATGGAATATGGATATGTAGCCTATATAGTGAGTACTGAGTACAGAGTAGTGAGTACTGAGTACAGAGTAGTGACTACTACTATAAAAAAGCTGATACATTATTGCTATGCTAGTAGTAATTAGTAATAAATATAAGGATATGGTCCATCTTAGAGCTTATCTTGTAAATTTGTTATATATGTGTGCTTTGTATCCTTGAATTCAGAGACGGATGTACTCTTTGTAGTCTCTTGCTGCCGGTTTGAGGATTTGGAATCAAATCCCAAAAGTTTAGTNAGTAAAGAGGAATGATAAATTTCTGGCATG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00265	79666	81455	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000265s00020609.1	PF01190.12	Pollen_Ole_e_I	37	128	4.00E-19

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	116.791
SRR1783600	control	115.490
SRR1783602	moderate drought stress	69.683
SRR1811619	moderate drought stress	70.490

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	54.273
DRR006520	Root Summer glycyrrhizin high producing strain	50.699
DRR006521	Root Winter glycyrrhizin high producing strain	19.826
DRR006522	Root Winter glycyrrhizin high producing strain	19.246
DRR006523	Root Summer glycyrrhizin low producing strain	110.640
DRR006524	Root Summer glycyrrhizin low producing strain	108.735
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.612
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.754

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	21.959
SRR2868004	Drought Stress (root)	18.697
SRR2967015	Control (root)	10.156

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.225
SRR9715740	Leaf	0.498
SRR9715741	Leaf	0.435
SRR9715739	Root	26.498
SRR9715742	Root	66.361
SRR9715743	Root	56.419

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.736
SRR8749028	MeJA induced 9h	1.696
SRR8749029	MeJA induced 9h	1.910
SRR8749030	Uninduced	1.009
SRR8749031	Uninduced	0.936
SRR8749032	Uninduced	0.899

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	96.605
SRR8400027	Control - Root	101.568