Gene detail information of Glyur000265s00020603 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G15790.2 | 6.00E-25 | RING/U-box superfamily protein |
| NR | KEH25151.1 | 2.46E-67 | RING-finger ubiquitin ligase [Medicago truncatula] |
| Swissprot | tr|Q8LE94|RING3_ARATH | 2.00E-22 | E3 ubiquitin-protein ligase At3g02290 |
| trEMBL | tr|A0A072U6Z2|A0A072U6Z2_MEDTR | 9.00E-68 | RING-finger ubiquitin ligase {ECO:0000313|EMBL:KEH25151.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00265 | 14907 | 15287 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.841 |
| SRR1783600 | control | 2.565 |
| SRR1783602 | moderate drought stress | 3.317 |
| SRR1811619 | moderate drought stress | 3.171 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.219 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.156 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 6.395 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 7.026 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6.855 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.659 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.425 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.908 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 2.181 |
| SRR2868004 | Drought Stress (root) | 2.655 |
| SRR2967015 | Control (root) | 2.918 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.448 |
| SRR9715740 | Leaf | 0.353 |
| SRR9715741 | Leaf | 1.143 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.724 |
| SRR9715743 | Root | 0.860 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.618 |
| SRR8749028 | MeJA induced 9h | 1.002 |
| SRR8749029 | MeJA induced 9h | 0.274 |
| SRR8749030 | Uninduced | 0.690 |
| SRR8749031 | Uninduced | 0.257 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.244 |
| SRR8400027 | Control - Root | 1.575 |