Gene detail

Gene detail information of Glyur000265s00020602

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G45230.1	4.00E-14	Disease resistance protein (TIR-NBS-LRR class) family
NR	AES89817.2	1.90E-113	disease resistance protein (TIR-NBS-LRR class), putative [Medicago truncatula]
COG	YP_723316.1	1.00E-06	small GTP-binding protein [Trichodesmium erythraeum IMS101]
Swissprot	tr\|Q9XGM3\|RPS4C_ARATH	9.00E-17	Disease resistance protein RPS4 {ECO:0000303\|PubMed:10571887}
trEMBL	tr\|G7JCP8\|G7JCP8_MEDTR	7.00E-114	Disease resistance protein (TIR-NBS-LRR class), putative {ECO:0000313\|EMBL:AES89817.2}

Sequence

Transcript Sequence

>Glyur000265s00020602.1
CTCAACTTGAGAACTCTGGATCTGAGCTACTCCAAGAATTTAATCAAGATGCCAGATTTTGGAGAGGTCCCAAATCTTGAACGGCTAAATCTCAAAGGATGTGTAGAACTTGAGCTGCTGGATCCATCTATTAGTGTTCTAACAAAGCTTGTTTTCCTGAATTTGGATGGTTGCAAAAATCTAAGAAGCATACCCAACAGTATACTTGGTCTCTGCTCTCTTGAATATTTAAATCTTTCCCACTGTTCCAAAGAGTTTAACAGTCCAAATCTTTCTGGTTGTTGGCTACCTTCCTTGCCTGGCTTCTTTTTTTTGCGTGAACTCAATGTTAGTTTTTGCGGTCTAAGGCATCTCCCTGATGCTATTGGATGTGTACATTGGTTAGAAAGATTAAATTTAGGGGGAAACAAATTTGTGACACTGCCTAGCCTCAGGGAGCTTTCCAAACTTTTGTATTTAAACTTGCAGCATTGCAATCTGTTGAAATCTTTGCCCGTGTTCCCTTCACCTTCTACCATCGAGAAAGATCATTTCAACCATTGCAATCTGTTGAAAGCAGGATTGTATATTTTCAACTGTCCTAATTTGGGTGAGTGGGAACACTGCAGTAACATGGCTTTTTCATGGATGAAACAATTCATTCGGGCAAATCAAGAATCCTCTGACCGCTTCGATTATATTGATATTGTTATTCCTGGAAGTGAAATACCAAGGTGGTTCAGCAATCAGAGCGTGGGTTACTCAATAAAAATGGACCTATCTCCCATTATGCATGACAATAATGTCATCGGTCTTGCTTTCTGTGTGGTACTTTCTGTGGCACCAGGCAGTAGCAATATAAGGAATTCCGCACAAATAGTAATAGTTGAGGATGACGACATTGCATATGAGTTAGCTCGCATTCCAGTAATTATTAATCAAGAGCTTATTACGGCCAAATCAAATCACATATGGCTAATCTATTTCCCTCGGGAATCACTCTCTGCAATAGACGTAACGGGTCTTAAATATCTCAGAGCTGAAACTTGGACTTGGAAGAGGGGAGGTTTGGAGGTGATTAACTGTGGGTATCATTGGGTATTTCAAGAGGATCTACAAAGGATGCATTGTGAAAATCCTTTAGGTCGGAGGCGCGAGTTTGTGGCAATTGAAGACCAGGCATAGCTACAATTGGAATCCTTCATCTGATTAAAGAACCACGTTGTCCCAACCTCAATTTAGTGAGATGAAACAACACAGGAAGAAGGTGAGGAAGAATCGCAGCAAAATGGTTAGGAGATGATGATTAATATCACCTGCAAAACGCATTCCTGCTATTGTCCAATCAATTTGCATATTTGGGCCTATAGAATGATTCCCCAACATTTCTTATTCATTTTAATTTTTAGGCCACTTGCTGCCATTATATCAAAGAGAAACTATGCAAACTACAAGCAGAGGAACAGTGACATGATTTTTCATCTCTGTTGTCATCTACTCAAGATTCCATAAGTGGAAAAAAAAAAGAAGGGAAATTGAAGCTATTCAGAAGAAGCCTGAGAATGACTTATGCTTATGTGCCATTCAAGGGCTTCAATGAAATTAAGAGTGCCTTTGTTTCTGCTCTTGCATCACACGGTCAATTGATTGAGGCACTTCTTGTATACGAGGAGATCAAGAAACCAATTTTGTATTATGATTTGAAGAAGCTTGGTATCCCTCCTACCGACAAGAACAGGACAGAAGGTGCCCTCAAAAAAGGTCCAGGGCACTACGAAAGGAGTTCAAGCCACTGAGAAGACCACTCACGTGGAAGGAGCTCTTTGATAATTGATATTTGTCCTTTGACATATGTCCAAAGAAACAAACTTGAGACTCTACATTTTAATTTGTTTAGGCAGCAAAAATTTGTTATATATTTAGCCCATCTATCTATTTATAATATATAAAATCTGAGACACAAGCTTAGGCATGGACATCTCAGCAAAGTCTTCACTGTATTTCCTTGCCATGTCAGCATTTTTGATGTGCTGTCAGCCTATGATTCTCCCTTACTCTTGCACTCTCCTTTCTTTGTCACCTATAATCAATAATTAATTAATACACCATATTTGTTTCCTGTGTAAAGTGAACGTCAATTGCAACGCTTACAAAAATTTATGCCATTTGATTTTATAACTGTTTGATTCATCTTCCAAAACAACCATTCATGACCTCACTTAAAGACATATATTGAATCCTGCGTTTTTTTTTCTTGCTTTTTAATGTCCCTATTCTTTTCGGTTTTTTTTTTTGCTTTTTTAACGTCCATCGAAAAAGCCATATTTGCTCATTGTCACGTACCCTTTTGAAAGTTCTTCAAAAACGATTCTTTTACTCTGTACCAAAAGCAGAAACTGTTTTATTAGACTTTTTCTCTGTTGCTATGGCTATGGAACAGTTCAATCAGCCCACTTGCTCAAAAAGTCATCTTCATTTGTCTCTACTCTCATTTCTATCTAGGAATCTCCCTAAGTCCCTCTGGCACCGCTGTGGTTTTGCACCACTTCATAGAGCTCCACACATGCCAAGATTTATTGCACTCCTGCACAGAGTAAGCAACTTCATTCTTCTCATTCAACTTACTCAACTTCTTGGATCTGACTGCATTTTCCTTCGTTCAGTTTTCAGTCAAGTGTAGGTGCAATGCCCAAGCCCATGATTCCAAGTGTAAGTTTGAGTGATATGGGGTTCTTCTGCCTTACTCATGATTTGAAGGCTGTAAGCATCCCTCTCCAGTCTTCTATATTTCATCTGCTGTTTTAGCTTGTCTTTAATCCAAATGTTGGGTTTTGTCCACGATTCTTTATTCTTTATGTAAGTTACTTCCCACTACTAATTGCTTTGTTTGATATTTGGGAGTAGAATTTTGTTCTAAGTAGCACTAATAGTTTTTGTCAATATGTACAAGTTGATGCACAATTTCNTTTTCAGCATGTATTTAGGCTACANACATTATGCAAAACTAAATTATTGCACTTCNCTTGATCCCTCCTTTGTTAAGCTTGCAATTTAATCAAATGCCTAACTTTTGCTATTTGAAACACCAATAGACGATGGCCAAGAGGCAATAAGAATTTAGGACAAAAAATTTAATTGAAGGATCACCAATACATGAGGACAACTAAAAGGAAAATATAACAAGTATTGGTTACTGTCCGAGCCTTTTAAGATCAAGTATCAAGAATCAAGAATGATATATAAACAATACAGTGTTAGGTCCATCAAATCATCCACCACGGGGTAGCAATTTCATACATCTACTTTAATCATATGAATCTCTAGATACAAAGTGTTACCATCTCAGTATTGAAGCATTTGTTTTATTTGTCATTCCTTCAAATTTAGCACCGTTTCCACTTAACAATAAAGTATATATCATGTCCTACCAATGAAATGACTACGAGAGGTGAGTTTCGCCTATTCTAAATATATAAAGGGATCCTTTCTATTGGAAATAGGAATTTTTCCCCAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00265	1474	6135	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000265s00020602.1	PF00560.28	LRR_1	33	54	0.11
Glyur000265s00020602.1	PF00560.28	LRR_1	89	105	0.55
Glyur000265s00020602.1	PF00560.28	LRR_1	112	129	0.33

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.158
SRR1783600	control	4.067
SRR1783602	moderate drought stress	2.857
SRR1811619	moderate drought stress	2.919

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.479
DRR006520	Root Summer glycyrrhizin high producing strain	4.473
DRR006521	Root Winter glycyrrhizin high producing strain	0.038
DRR006522	Root Winter glycyrrhizin high producing strain	0.041
DRR006523	Root Summer glycyrrhizin low producing strain	0.013
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	20.911
DRR006526	Leaf Summer glycyrrhizin high producing strain	20.515

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.006
SRR2868004	Drought Stress (root)	0.167
SRR2967015	Control (root)	0.000

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	79.307
SRR9715740	Leaf	110.422
SRR9715741	Leaf	101.067
SRR9715739	Root	4.652
SRR9715742	Root	19.246
SRR9715743	Root	18.365

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.882
SRR8400027	Control - Root	10.641