Gene detail information of Glyur000264s00019970 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G01700.1 | 5.00E-127 | RHO guanyl-nucleotide exchange factor 2 |
| NR | XP_004492729.1 | 0 | PREDICTED: rop guanine nucleotide exchange factor 2-like isoform X1 [Cicer arietinum] |
| Swissprot | tr|Q9LQ89|ROGF2_ARATH | 1.00E-168 | Rop guanine nucleotide exchange factor 2 |
| trEMBL | tr|K7MU90|K7MU90_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA18G46690.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00264 | 139575 | 142823 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000264s00019970.1 | PF03759.8 | PRONE | 106 | 165 | 3.50E-24 |
| Glyur000264s00019970.1 | PF03759.8 | PRONE | 162 | 285 | 2.90E-53 |
| Glyur000264s00019970.1 | PF03759.8 | PRONE | 337 | 490 | 4.00E-71 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.353 |
| SRR1783600 | control | 1.331 |
| SRR1783602 | moderate drought stress | 1.360 |
| SRR1811619 | moderate drought stress | 1.376 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.549 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.411 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.680 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.123 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.684 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.838 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.465 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.559 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 7.846 |
| SRR2868004 | Drought Stress (root) | 3.534 |
| SRR2967015 | Control (root) | 5.577 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.623 |
| SRR9715740 | Leaf | 0.314 |
| SRR9715741 | Leaf | 1.443 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.512 |
| SRR9715743 | Root | 0.443 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.476 |
| SRR8749028 | MeJA induced 9h | 0.389 |
| SRR8749029 | MeJA induced 9h | 0.271 |
| SRR8749030 | Uninduced | 0.350 |
| SRR8749031 | Uninduced | 2.799 |
| SRR8749032 | Uninduced | 2.497 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 5.482 |
| SRR8400027 | Control - Root | 4.527 |