Gene detail information of Glyur000264s00019960 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G29910.1 | 1.00E-172 | origin recognition complex protein 5 |
| NR | XP_003623975.1 | 0 | Origin recognition complex 5 subunit [Medicago truncatula] |
| Swissprot | tr|Q6EWX0|ORC5_ARATH | 0 | Origin of replication complex subunit 5 {ECO:0000303|PubMed:16179646} |
| trEMBL | tr|G7L4P5|G7L4P5_MEDTR | 0 | Origin recognition complex subunit 5 {ECO:0000313|EMBL:AES80193.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00264 | 51980 | 55156 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000264s00019960.1 | PF13191.1 | AAA_16 | 58 | 222 | 5.50E-09 |
| Glyur000264s00019960.1 | PF14630.1 | ORC5_C | 248 | 539 | 2.20E-63 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.781 |
| SRR1783600 | control | 1.788 |
| SRR1783602 | moderate drought stress | 2.168 |
| SRR1811619 | moderate drought stress | 2.242 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.930 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.925 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.614 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.497 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.972 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.980 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.094 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.119 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 3.902 |
| SRR2868004 | Drought Stress (root) | 3.305 |
| SRR2967015 | Control (root) | 3.221 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.263 |
| SRR9715740 | Leaf | 3.055 |
| SRR9715741 | Leaf | 1.450 |
| SRR9715739 | Root | 0.637 |
| SRR9715742 | Root | 1.510 |
| SRR9715743 | Root | 0.920 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.379 |
| SRR8749028 | MeJA induced 9h | 4.208 |
| SRR8749029 | MeJA induced 9h | 1.249 |
| SRR8749030 | Uninduced | 0.181 |
| SRR8749031 | Uninduced | 0.255 |
| SRR8749032 | Uninduced | 0.139 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 4.767 |
| SRR8400027 | Control - Root | 4.956 |