Gene detail

Gene detail information of Glyur000263s00013597.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G19450.1	5.00E-138	GroES-like zinc-binding alcohol dehydrogenase family protein
NR	AEV93476.1	0	cinnamyl alcohol dehydrogenase [Caragana korshinskii]
COG	YP_003897964.1	3.00E-111	alcohol dehydrogenase [Halomonas elongata DSM 2581]
Swissprot	tr\|P31656\|CADH_MEDSA	0	Probable cinnamyl alcohol dehydrogenase
trEMBL	tr\|V9I5Y7\|V9I5Y7_9FABA	0	Cinnamyl alcohol dehydrogenase {ECO:0000313\|EMBL:AEV93476.1}

Sequence

Transcript Sequence

>Glyur000263s00013597.1
CTCCCGTAGAGTACGCAATGACACCTCCGATTNAAACCAATCCTATTCACCTACCGCACCACAGGGCCCCACCCAGAGACGTTTTGTCTTTGGCCCCTTTATATATACGCATATAATCCTGAATGCCACTAACCAAGGTCACTCATAGTTGTTCTGTCTGTGTCTCCACTCCTTCCTCAAATCCTCAAATTCTCAAATTCTCAAATTCTCTTCACCTTTTTGCTTCTCAGAAGAAGGGGAAANAATGGGTAGCCTTGAAGCGGAAAGAACAACAGTAGGATGGGCAGCAAGAGACCCTTCTGGAATTCTCTCCCCATACGCCTACACTCTGAGAAACACAGGCCCAGATGATGTTTACATCAAAGTTCACTACTGTGGGATCTGCCATTCTGATCTCCACCAAATCAAGAATGATCTTGGCATGTCCAATTATCCCATGGTCCCCGGGCATGAAGTGGTTGGCGAGGTACTTGAGGTGGGTTCAAACGTGACACGGTTCAGAGTGGGAGAAATTGTGGGAGCTGGACTCCTCGTTGGGTGCTGCAAAAACTGCAACGCATGCCAATCTGATATCGAGCAATACTGCAACAAGAAGATCTGGTCTTACAATGACGTTTACACAGACGGAAAACCCACCCAGGGTGGCTTTGCTGAAACCATGATCGTTGAGCAGAAGTTTGTTGTGAAGATACCAGAGGGTTTGGCGCCAGAGCAAGCTGCACCACTGTTGTGTGCGGGTGTGACTGTGTATAGTCCACTTGCACACTTTGGGCTGAAGGAAAGTGGGTTGAGGGGTGGAATATTGGGGCTTGGAGGAGTGGGACACATGGGGGTGAAGGTAGCAAAGGCACTGGGTCACCATGTTACTGTGATAAGCTCTTCTGATAAGAAGAAACAAGAGGCACTTGAACACCTTGGAGCTGACCAATACCTTGTTAGCTCAGACATCACTAGCATGCAAGAAGCTGCTGATTCACTTGACTACATCATTGATACTGTCCCTGTTGGTCACCCTCTTGAGCCTTATCTTTCATTGCTCAAAGTTGATGGCAAGTTGATCTTGATGGGTGTCATCAACACCCCTCTACAATTTGTTTCCCCCATGGTCATGCTTGGGAGGAAGACAATCACTGGAAGCTTCGTTGGGAGCATTAAGGAGACAGAGGAGATGCTGGAGTTCTGGAAAGAGAAGGGTCTGAGTTCAATGATTGAAATCGTGACTATAGATTACATTAACAAGGCCTTTGAAAGATTGGAGAAGAATGATGTGAGATATAGGTTCGTCGTGGATGTTAAAGGCAGTAAACTTGATCAGTGAAACAGTTAATTAAGCCTTTAAGGCTAATATACCCCCAACTATGTTTATTGTGTTTGTTTATTTGGGAAAGTGGGATCTCATTTCTCTGATGTGGTTTCGCACAGTTTGTTGATCAAATTAGTGGATGTCAAATTCCCAGGGAAAGCAAAAGATACCAATCTTCTTTTATTCTGTTGTTTAAAATATTGATATTGATTTTGTTGTGTCGTAAATAAAGAATAGGAAAAAAAATATATGGATCTTGGATTGGGCGTATAATAGTGGCTCACCAACTTTTATGAAAAGGAGTGTTTGCTTGTGTGAACAAAAATGTTGATCGTTGGATGGATGGATTGGTTGACCTTTGTTTACCTAATCTTTGAAATTCAGAAATTCTCTCAGCCGCACACGTATGCCAAACATGGCTTCAGTTTCACATTCTTCATTCACTTTCGTGATTGCTTTGTCGTGCAGGCCGCAGCCCGCAGATGCTTCTGTTCTGCCCCCGTTGTATTGTTAATTATTATTCCTGAATTTATTATGTGAACTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00263	213322	215609	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00083	E1.1.1.195	EC:1.1.1.195	Phenylpropanoid biosynthesis	map00940

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0008270 zinc ion binding

GO:0016491 oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000263s00013597.1	PF08240.7	ADH_N	34	149	2.80E-28
Glyur000263s00013597.1	PF00107.21	ADH_zinc_N	191	312	8.50E-23

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	168.773
SRR1783600	control	167.861
SRR1783602	moderate drought stress	330.781
SRR1811619	moderate drought stress	332.459

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	140.785
DRR006520	Root Summer glycyrrhizin high producing strain	140.085
DRR006521	Root Winter glycyrrhizin high producing strain	115.287
DRR006522	Root Winter glycyrrhizin high producing strain	112.613
DRR006523	Root Summer glycyrrhizin low producing strain	230.002
DRR006524	Root Summer glycyrrhizin low producing strain	232.858
DRR006525	Leaf Summer glycyrrhizin high producing strain	90.821
DRR006526	Leaf Summer glycyrrhizin high producing strain	90.798

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	428.577
SRR2868004	Drought Stress (root)	540.905
SRR2967015	Control (root)	524.468

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	273.442
SRR9715740	Leaf	396.701
SRR9715741	Leaf	552.374
SRR9715739	Root	143.508
SRR9715742	Root	264.911
SRR9715743	Root	240.981

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	155.352
SRR8749028	MeJA induced 9h	301.017
SRR8749029	MeJA induced 9h	134.914
SRR8749030	Uninduced	247.424
SRR8749031	Uninduced	176.456
SRR8749032	Uninduced	120.937

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	287.553
SRR8400027	Control - Root	208.527