Gene detail information of Glyur000263s00013594 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G15280.1 | 2.00E-38 | Reticulon family protein |
| NR | XP_004496943.1 | 4.26E-107 | PREDICTED: reticulon-like protein B11-like isoform X1 [Cicer arietinum] |
| Swissprot | tr|Q9LT71|RTNLK_ARATH | 5.00E-72 | Reticulon-like protein B11 |
| trEMBL | tr|C6T590|C6T590_SOYBN | 8.00E-105 | Reticulon-like protein {ECO:0000256|RuleBase:RU210713} (Fragment) |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00263 | 197673 | 200247 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000263s00013594.1 | PF02453.12 | Reticulon | 18 | 177 | 2.90E-45 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.504 |
| SRR1783600 | control | 6.402 |
| SRR1783602 | moderate drought stress | 5.495 |
| SRR1811619 | moderate drought stress | 5.636 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 14.182 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 14.002 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 17.365 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 17.256 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 11.540 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 11.474 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.405 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.436 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 48.669 |
| SRR2868004 | Drought Stress (root) | 37.890 |
| SRR2967015 | Control (root) | 33.763 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 20.811 |
| SRR9715740 | Leaf | 20.759 |
| SRR9715741 | Leaf | 16.851 |
| SRR9715739 | Root | 7.591 |
| SRR9715742 | Root | 16.041 |
| SRR9715743 | Root | 15.148 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 36.975 |
| SRR8749028 | MeJA induced 9h | 36.579 |
| SRR8749029 | MeJA induced 9h | 26.235 |
| SRR8749030 | Uninduced | 26.590 |
| SRR8749031 | Uninduced | 23.823 |
| SRR8749032 | Uninduced | 16.856 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 31.699 |
| SRR8400027 | Control - Root | 29.258 |