Gene detail

Gene detail information of Glyur000263s00013589.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G34215.2	8.00E-85	Domain of unknown function (DUF303)
NR	XP_004496953.1	5.36E-151	PREDICTED: probable carbohydrate esterase At4g34215-like [Cicer arietinum]
COG	YP_847548.1	2.00E-09	hypothetical protein Sfum_3442 [Syntrophobacter fumaroxidans MPOB]
Swissprot	tr\|Q8L9J9\|CAES_ARATH	2.00E-105	Probable carbohydrate esterase At4g34215
trEMBL	tr\|A0A072W1E8\|A0A072W1E8_MEDTR	2.00E-150	Carbohydrate esterase plant-like protein {ECO:0000313\|EMBL:KEH44110.1}

Sequence

Transcript Sequence

>Glyur000263s00013589.1
TTGGTGGAGAGGGTGGGTGCTGAGTGTTGACGGTTAAACCGCACTGTTTGGTGAATGCAGAATGNGTTATGAATGCGAGCGATGTGGGGTTGAGTGCTCATCCGTAGTTTACACTCATGATGATCTCATTTCAAAGAGTGAAAGTCCTTTTAGGCCCACTCATCTAATNTAATAATGTTCTTGATGGCCCCTTGTTCATTTTGGAACACTCCTTAGATCTGGTTTGAGATTTAACAAACAGGTCAAAAAAGAAAAATCACAAACTCCCAAGAAACCCCTTGTCTGTTGTTGGAGGTGGAAGGAAACCATGGAAACCGACACATATCCAAAGGATCAGAACCCACCAAAACCCAAAAGGCAAATCTTCATACTCTCCGGTCAGAGCAACATGTCGGGTCGTGGCGGTGTGATCAATAAACCAAACAAGCACTGGGACGGCGTCGTTCCGCCGGAGTGCCGCCCCGACCCTTCCATCCTCCGCTTCAGCGCCTCCCTTCAATGGGAACCCGCCCACGAACCCATCCACGCCGACATCGACACCAAGAAGGCCTGCGGCGTCGGTCCCGGCATGGCCTTCGCCAACNTGGTGCGGCGGCGCGTGGCCGGCGAGCTGGGTCTTGTCCCGTGCGCCGTTGGCGGCACCGCCATAAGTGAGTGGGCGCGTGGGGAGGAGTTGTACGAAAACATGGTGAAGAGGGCCAAGGAAAGCGTGAAGGGGTACGAGGAGAATTGCGAGATCAAAGCGCTGCTGTGGTTTCAGGGAGAGAGTGACACGTCGACGGAGCATGACGCCGAGGCTTACAAGGTCAACATGGAGAACCTCATCCACAATGTTCGTCAAGACCTCAATTTGCCATCTCTTCCCATAATTCAGGTTGCACTAGCCTCAGGGTTTGAGTNCATGGAGAAAGTGAGGGAAGCGCAAAAGGGAATTAATCTTCCGAAGGTGATTTGCGTGGACGCAAAGGGGTTGCCATTGAGGGAAGATAATCTTCACCTGACCATGGAAGCCCAAGTTAAATTGGGTCACATGCTGGCTGAGGCCTATCTTACCCATTTTGATGCATGAGTTATTTGGGAAAAAGTCTCCAATTTATTAAAGCCACTATTTCAAGGTTTTAATTATATATATGATTTTATTTACTCTGTGTGAATCGTGATTCTGCTGCTTTCAAGGTTTAATTAGTTGTCGTGAGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00263	179521	180879	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	CE6

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000263s00013589.1	PF03629.13	DUF303	18	249	9.70E-35

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.820
SRR1783600	control	4.753
SRR1783602	moderate drought stress	3.635
SRR1811619	moderate drought stress	3.686

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.210
DRR006520	Root Summer glycyrrhizin high producing strain	4.938
DRR006521	Root Winter glycyrrhizin high producing strain	7.658
DRR006522	Root Winter glycyrrhizin high producing strain	7.760
DRR006523	Root Summer glycyrrhizin low producing strain	4.205
DRR006524	Root Summer glycyrrhizin low producing strain	4.248
DRR006525	Leaf Summer glycyrrhizin high producing strain	12.104
DRR006526	Leaf Summer glycyrrhizin high producing strain	12.609

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	15.202
SRR2868004	Drought Stress (root)	11.453
SRR2967015	Control (root)	11.736

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	36.995
SRR9715740	Leaf	20.116
SRR9715741	Leaf	21.826
SRR9715739	Root	5.041
SRR9715742	Root	6.709
SRR9715743	Root	5.599

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.490
SRR8749028	MeJA induced 9h	3.960
SRR8749029	MeJA induced 9h	2.173
SRR8749030	Uninduced	2.314
SRR8749031	Uninduced	0.622
SRR8749032	Uninduced	1.801

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	16.151
SRR8400027	Control - Root	16.661